View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12008_low_10 (Length: 324)
Name: NF12008_low_10
Description: NF12008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12008_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 21182792 - 21183105
Alignment:
| Q |
1 |
gccaaaccactaatgttcttctcaagaccaagtctcactatcccaatgcagccttcttaatgagtgctagaccatatgctaccggccagggaacttttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21182792 |
gccaaaccactaatgttcttctcaagaccaagtctcactatcccaatgcagccttcttaatgagtgctagaccatatgctaccggccagggaacttttga |
21182891 |
T |
|
| Q |
101 |
caacaccaccgttgccggtatcttggaatatgaaatcccatccaatactcatcattcagcttcttcactaaaaaagattccacttttcaaacctactctc |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21182892 |
caacaccactgttgccggtatcttggaatatgaaatcccatccaatactcatcattcagcttcttcactaaaaaagattccacttttcaaacctactctc |
21182991 |
T |
|
| Q |
201 |
cctgcacttaatgacacttcttttgcaacaaagttttccaagaaactccgtagccttgctagtgcccagtttcctgctaacgttccacagaaagttgata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| ||||||||||||||||||||||||| |
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| T |
21182992 |
cctgcacttaatgacacttcttttgcaacaaagttttccaagaaactccgcagccttgccagtccccagtttccggctaacgttccacagaaagttgata |
21183091 |
T |
|
| Q |
301 |
agcactttttcttc |
314 |
Q |
| |
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| |||||||||||| |
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| T |
21183092 |
aacactttttcttc |
21183105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 21205266 - 21205579
Alignment:
| Q |
1 |
gccaaaccactaatgttcttctcaagaccaagtctcactatcccaatgcagccttcttaatgagtgctagaccatatgctaccggccagggaacttttga |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||| ||||||||| ||||| | |||| ||| ||||||| |
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| T |
21205266 |
gccaaaccactaatgttcttctcaataccaagtcacactatcccaatgcggcattcttaatgactgctagaccctatgccgctggccctggaccttttga |
21205365 |
T |
|
| Q |
101 |
caacaccaccgttgccggtatcttggaatatgaaatcccatccaatactcatcattcagcttcttcactaaaaaagattccacttttcaaacctactctc |
200 |
Q |
| |
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|||||| || || || | |||| | ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| || |||||||||| ||| |
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| T |
21205366 |
caacacaacggtcgctgctatccttgaatatgaaatcccaccaaatactcatcattcagcttcttcactaaaaaagcatcctctattcaaacctattctt |
21205465 |
T |
|
| Q |
201 |
cctgcacttaatgacacttcttttgcaacaaagttttccaagaaactccgtagccttgctagtgcccagtttcctgctaacgttccacagaaagttgata |
300 |
Q |
| |
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|||||| ||||||| || || |||||||||||||| ||||| |||||||||||||| || ||||| |||||||| ||||| ||||| ||||| | |||| |
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| T |
21205466 |
cctgcatttaatgatacatcctttgcaacaaagttctccaacaaactccgtagcctagcaagtgcacagtttccagctaatgttcccaagaaaatcgata |
21205565 |
T |
|
| Q |
301 |
agcactttttcttc |
314 |
Q |
| |
|
| |||||||||||| |
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|
| T |
21205566 |
aacactttttcttc |
21205579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 3 - 314
Target Start/End: Original strand, 21853495 - 21853806
Alignment:
| Q |
3 |
caaaccactaatgttcttctcaagaccaagtctcactatcccaatgcagccttcttaatgagtgctagaccatatgctaccggccagggaacttttgaca |
102 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| || || ||||| | ||||||||| || |||||||||||||| ||||| || |||||||||| |
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| T |
21853495 |
caaaccactaatgttcttctcaaaaccaaacctcattacccaaatgctacattcttaatgttagcaagaccatatgctacaggccaaggcacttttgaca |
21853594 |
T |
|
| Q |
103 |
acaccaccgttgccggtatcttggaatatgaaatcccatccaatactcatcattcagcttcttcactaaaaaagattccacttttcaaacctactctccc |
202 |
Q |
| |
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|| | || ||||| || ||| | ||||||||||| |||| |||||||| |||||| ||||||||| ||||| |||||||||| ||||||| ||| || |
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| T |
21853595 |
actcaacagttgctggaatcatagaatatgaaattccatttaatactcaccattcaaattcttcactcaaaaaacttccacttttgaaacctattctacc |
21853694 |
T |
|
| Q |
203 |
tgcacttaatgacacttcttttgcaacaaagttttccaagaaactccgtagccttgctagtgcccagtttcctgctaacgttccacagaaagttgataag |
302 |
Q |
| |
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| ||||||||||||||| ||||||||||| || | || ||||| | |||| | || | ||| |||||||| ||||| ||||| || |||||||||||| |
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| T |
21853695 |
tcaacttaatgacacttcatttgcaacaaatttcactaacaaacttcatagcttagcaaatgctcagtttccagctaatgttcctcaaaaagttgataag |
21853794 |
T |
|
| Q |
303 |
cactttttcttc |
314 |
Q |
| |
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|||||||||||| |
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|
| T |
21853795 |
cactttttcttc |
21853806 |
T |
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