View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12008_low_11 (Length: 270)
Name: NF12008_low_11
Description: NF12008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12008_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 21182563 - 21182815
Alignment:
| Q |
1 |
agaattctttatgaaacggtatcagcaatatggttttaatcattttaagatgcaactctttacagatacattcaagctaaaggtgaagcctggaaagact |
100 |
Q |
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| T |
21182563 |
agaattctttatgaaacggtatcagcaatatggttttaatcattttaa-------ctctttacagatacattcaagctaaaggtgaagcctggaaagact |
21182655 |
T |
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| Q |
101 |
taccttctacgtttgatcaatgctgcactaaatgatgagttattcttcagcgttgcaaatcacaccctcaaagttgttgaagtcgacgctatttacgtga |
200 |
Q |
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| T |
21182656 |
taccttctacgtttgatcaatgctgcactaaatgatgagttattcttcagcgttgcaaatcacaccctcaaagttgttgaagccgacgctatttacgtga |
21182755 |
T |
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| Q |
201 |
aaccttttgagactaacaccatccttattgcccctggccaaaccactaatgttcttctca |
260 |
Q |
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| T |
21182756 |
aaccttttgagactaacaccatccttattgcccctggccaaaccactaatgttcttctca |
21182815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 61 - 260
Target Start/End: Original strand, 21205090 - 21205289
Alignment:
| Q |
61 |
tacagatacattcaagctaaaggtgaagcctggaaagacttaccttctacgtttgatcaatgctgcactaaatgatgagttattcttcagcgttgcaaat |
160 |
Q |
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| T |
21205090 |
tacagatacattcaaactaaaggtgaagcctggaaaaacctaccttctacgtttgatcaacgctgcgctgaatgatgagttgttcttcagcattgcaaat |
21205189 |
T |
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| Q |
161 |
cacaccctcaaagttgttgaagtcgacgctatttacgtgaaaccttttgagactaacaccatccttattgcccctggccaaaccactaatgttcttctca |
260 |
Q |
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| T |
21205190 |
cataccctcaaagttgttgaagcagatgctatttatgttaaaccttttgagacaaacaccatctatattgcccctggccaaaccactaatgttcttctca |
21205289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 61 - 260
Target Start/End: Original strand, 21853317 - 21853516
Alignment:
| Q |
61 |
tacagatacattcaagctaaaggtgaagcctggaaagacttaccttctacgtttgatcaatgctgcactaaatgatgagttattcttcagcgttgcaaat |
160 |
Q |
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| T |
21853317 |
tacagatacattcaagctaaaggtgaagccaagaaagacttaccttcttcgtttaatcaacgccgcactaaacgacgaattattcttcagcatagcaaac |
21853416 |
T |
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| Q |
161 |
cacaccctcaaagttgttgaagtcgacgctatttacgtgaaaccttttgagactaacaccatccttattgcccctggccaaaccactaatgttcttctca |
260 |
Q |
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| T |
21853417 |
cacactctcacagttgttgaagcagatgcagtttatgcaaaaccttttgtcacaaacacaatcctaattgcacctggacaaaccactaatgttcttctca |
21853516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 22636249 - 22636196
Alignment:
| Q |
116 |
atcaatgctgcactaaatgatgagttattcttcagcgttgcaaatcacaccctc |
169 |
Q |
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|||||||||||||| ||||||||| | ||||| ||| |||| |||||||||||| |
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| T |
22636249 |
atcaatgctgcactcaatgatgagatgttctttagcattgctaatcacaccctc |
22636196 |
T |
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