View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12008_low_13 (Length: 246)
Name: NF12008_low_13
Description: NF12008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12008_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 7425621 - 7425831
Alignment:
| Q |
18 |
atgaatccaaggaataaaatccccaatattgaagaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattt |
117 |
Q |
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| T |
7425621 |
atgaatccaaggaataaaatccccaacattgaggaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattt |
7425720 |
T |
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| Q |
118 |
tcactcttctccaaatactttttccccaaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttg |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7425721 |
tcactcttctccaaatactttttgcccaaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttg |
7425820 |
T |
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| Q |
218 |
agttaaatagt |
228 |
Q |
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| T |
7425821 |
aattaaatagt |
7425831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 7431611 - 7431810
Alignment:
| Q |
19 |
tgaatccaaggaataaaatccccaatattgaagaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcatttt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| |||||| |
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| T |
7431611 |
tgaatccaaggaataaaatccccaatattgaagaccccattaagcaaaaacaactcatccaacatctccttaaactcttcaggggaaataataacatttt |
7431710 |
T |
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| Q |
119 |
cactcttctccaaatactttttccccaaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttga |
218 |
Q |
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| T |
7431711 |
cactcttctccaagtatttcttccccaacaccatgcggcttataatattaagactaaaagttgaaagatggtccttcaacaaaatagttttattttttga |
7431810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 7416635 - 7416835
Alignment:
| Q |
18 |
atgaatccaaggaataaaatccccaatattgaagaccccattaagcaaaaacaattcatctaacatcttcttaaactcttcaggggaaataatagcattt |
117 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||| ||||| |
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| T |
7416635 |
atgaatccaaggaataaaatccccaatattgagaattccattaagtaaaaacaactcatccaacatcttcttaaactcatcaggggaaataactgcatta |
7416734 |
T |
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| Q |
118 |
tcactcttctccaaatactttttccccaaaaccatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgttttttg |
217 |
Q |
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||| |||| ||||| ||||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
7416735 |
tcagtcttttccaagtactttttccctagcaccattcgacttataacatttagactcaaagttgaaagatggtctttcaccaaaattgttttgttttttg |
7416834 |
T |
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| Q |
218 |
a |
218 |
Q |
| |
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| |
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| T |
7416835 |
a |
7416835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 7430039 - 7429973
Alignment:
| Q |
148 |
accatgcgacttataacattgagactcaaagttgaaagatggtccttcaacaaaattgttttgtttt |
214 |
Q |
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||||||||||| |||| ||||| ||| |||||||||||||||||||| ||| |||| ||||| |||| |
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| T |
7430039 |
accatgcgactaataatattgaaactaaaagttgaaagatggtcctttaacgaaatagttttatttt |
7429973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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