View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12008_low_6 (Length: 438)
Name: NF12008_low_6
Description: NF12008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12008_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 34784443 - 34784129
Alignment:
| Q |
17 |
atattcttgtcaatcatgaaccaaccaatttcaaaggaacatcagcacgtgcgactgatatatggaaaataaatattcttcttttagatttttactacat |
116 |
Q |
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| T |
34784443 |
atattcttgtcaatcatgaaccaaccaatttcaaaggaacatcagcacgtgcgactgatatatcaaaaataaatattcttattttagatttttactacat |
34784344 |
T |
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| Q |
117 |
gataaaattctataacacacaaaaaatcagtatataaga--nnnnnnnaacaagcaaaaataaatataaaattaacaataaagaagccgtctctgaagta |
214 |
Q |
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| T |
34784343 |
gataaaattctataacacacaaaaaatctgtatataagattttttttgaacaagcaaaaataaatat-aaattaacaacaaagaagccgtctcttaagta |
34784245 |
T |
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| Q |
215 |
caagatgtgtcaaaagaaaacgactaaaatttacaaacaaagtccacagaacaaatgacatatactagttaaccaatgtccaaacacgaaagcgggcata |
314 |
Q |
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| T |
34784244 |
caagacgtgtcaaaagaagacgattaaaatttacaaacaaagtccacagaataaatgacatatattggttaaccaatgtccagacaaacaagcgggcata |
34784145 |
T |
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| Q |
315 |
caaaccaactatcaac |
330 |
Q |
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| T |
34784144 |
ccaaccaactatcaac |
34784129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 343 - 438
Target Start/End: Complemental strand, 34784104 - 34784009
Alignment:
| Q |
343 |
agaaatttaatcattttcatctctctttctaaacatgtgtagagctctatcaaggtataaattattatgagttacgaagaaggatgggcaaaattt |
438 |
Q |
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| T |
34784104 |
agaaatttaatcattttcacctctctttctaaacatgtgtagaactctatcaaggtatgaattattatgatttacgaagaaggatggacaaaattt |
34784009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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