View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12009_high_13 (Length: 370)
Name: NF12009_high_13
Description: NF12009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12009_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 31 - 344
Target Start/End: Original strand, 48769539 - 48769852
Alignment:
| Q |
31 |
aaaatatccatgacatgattcccttgtgaaatattttcgacatactttccaatcaaaattcgaccaggagnnnnnnnttagagaaatatgtaactatacc |
130 |
Q |
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| T |
48769539 |
aaaatatccatgacatgattcccttgtgaaatattttcgacatactttccaatcaaaattcgaccaggagaaaaaaattagagaaatatgtaactatacc |
48769638 |
T |
|
| Q |
131 |
atcaaagactccaaaaaggccaacgatttcaccatcgacaccgtcaattctggtctcataaaaatcttccattgaagatctcttgccaggcgagctagca |
230 |
Q |
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| T |
48769639 |
atcaaagactccaaaaaggccaacgatttcaccatcgacaccgtcaattctggtctcataaaaatcttccattgaagatctcttgccaggcgagctagca |
48769738 |
T |
|
| Q |
231 |
tacccatagctaaactttccattgtgactacatgtacaaatcataacaaattgtgtcacagtaatgtcatacagttcataatttctttttcccccttttc |
330 |
Q |
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| T |
48769739 |
tacccatagctaaactttccattgtgactacatgtacaaatcataacaaattgtgtcacagtaatgtcatacagttcataatttctttttcccccttttc |
48769838 |
T |
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| Q |
331 |
tcccaaatcaatga |
344 |
Q |
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|||||||||||||| |
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| T |
48769839 |
tcccaaatcaatga |
48769852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 111 - 253
Target Start/End: Complemental strand, 3409562 - 3409420
Alignment:
| Q |
111 |
gagaaatatgtaactataccatcaaagactccaaaaaggccaacgatttcaccatcgacaccgtcaattctggtctcataaaaatcttccattgaagatc |
210 |
Q |
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| T |
3409562 |
gagaattatgtaaatataccatcaaaaactccaaaaaggccaacaacttcgccattaatgccgtcaattcttgtctcataaaaatcttccattgaagatc |
3409463 |
T |
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| Q |
211 |
tcttgccaggcgagctagcatacccatagctaaactttccatt |
253 |
Q |
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| T |
3409462 |
tcttgccaggggagctagcatatccatagctgaattttccatt |
3409420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 111 - 253
Target Start/End: Original strand, 3437261 - 3437403
Alignment:
| Q |
111 |
gagaaatatgtaactataccatcaaagactccaaaaaggccaacgatttcaccatcgacaccgtcaattctggtctcataaaaatcttccattgaagatc |
210 |
Q |
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||||| ||||||| |||||||||||| ||||||||||||||||| | ||| |||| | ||||||||||| |||||||||||||||||||||||||||| |
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| T |
3437261 |
gagaattatgtaaatataccatcaaaaactccaaaaaggccaacaacttcgccattaatgccgtcaattcttgtctcataaaaatcttccattgaagatc |
3437360 |
T |
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| Q |
211 |
tcttgccaggcgagctagcatacccatagctaaactttccatt |
253 |
Q |
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| T |
3437361 |
tcttgccaggggagctagcatatccatagctgaattttccatt |
3437403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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