View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12009_high_15 (Length: 363)
Name: NF12009_high_15
Description: NF12009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12009_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 29 - 333
Target Start/End: Original strand, 46280595 - 46280907
Alignment:
| Q |
29 |
atatataataacaataactatagccctagctagctagtacatgtcttgatgatgaaatatatatata------------gacatagctatagattttggt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46280595 |
atatataataacaataactatagccctagctagctagtacatgtcttgatgatgaaatatatatatatatatatatatagacatagctatagattttggt |
46280694 |
T |
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| Q |
117 |
ttggcttgttaattattgagactttccaaagcctgagaatgacatatatgttaattcctctttaagtaagagcagcagctattaattccatccttttcag |
216 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46280695 |
ttggcttgttaattatcgagactttccaaagcctgagaatgacat----gttaattcctctttaagtaagagcagcagctattaattccatccttttcag |
46280790 |
T |
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| Q |
217 |
ttcatttttgtgtatattttctgctccctgcaaataaaggaaggcataatttgatgagtaagacaagtactattaattttttacttctatgacattgcca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46280791 |
ttcatttttgtgtatattttctgctccctgcaaataaaggaaggcataatttgatgagtaagacaagtactattaattttttacttctatgacattgcca |
46280890 |
T |
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| Q |
317 |
gtaccgtgtatatatat |
333 |
Q |
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||||||||||||||||| |
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| T |
46280891 |
gtaccgtgtatatatat |
46280907 |
T |
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