View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12009_high_18 (Length: 341)
Name: NF12009_high_18
Description: NF12009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12009_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 20670858 - 20670538
Alignment:
| Q |
1 |
aagggtgaaattaccggggaagttatcggtaacggtgatggttttaccggggagaagagtaggtatacgagagtaacgagggaggaggaggaggtcagtg |
100 |
Q |
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| T |
20670858 |
aagggtgaaattaccggggaagttatcggtaacggtgatggttttaccggggagaagagtagggatacgagagtaacgagggaggaggaggaggtcagcg |
20670759 |
T |
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| Q |
101 |
tagacgagacgttgagggatgatatgatatggaaaagtgaaggggtttaatgtagaggaagatggtaagggttgttgagggatgaagagtgttaggctaa |
200 |
Q |
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| T |
20670758 |
tagacgagacgttgagggatgatatgatatggaaaagtgaaggggtttaatgtagaggaagatggtaagggttgttgaggaatgaagagtgttaggctaa |
20670659 |
T |
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| Q |
201 |
gtgatggatgtgagattgataagatgcttacccatttgtttacgcttgtgtctcctgatcctattagtgcatcaagaatgttgttcatttcttgcattgc |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20670658 |
gtgatggatgggagattgataagatgcttacccatttgtttatgcttgtgtctcctgatcctattagtgcatcaagaatgttgttcatttcttgcattgc |
20670559 |
T |
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| Q |
301 |
caatggtggagttgatgatgt |
321 |
Q |
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||||||||||||||||||||| |
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| T |
20670558 |
caatggtggagttgatgatgt |
20670538 |
T |
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