View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12009_high_20 (Length: 337)
Name: NF12009_high_20
Description: NF12009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12009_high_20 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 5148170 - 5148504
Alignment:
| Q |
1 |
gataaatacatctagacaaaaatacgaagtcagtgtggcctatatatacacatcaaagggtctcatttgaaaattcaccttcttctggaaaattatatct |
100 |
Q |
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| T |
5148170 |
gataaatacatctagacaaaaatacgaagtcagtgtggcctatatatacacatcaaagggtctcatttgaaaattcaccttcttctggaaaattatatct |
5148269 |
T |
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| Q |
101 |
tgcatgtctaaatcaacaaaagaagactcttacagcctaatatgaaagcgaaagcatgtacttcctaggcccacattcaacttgatctttatctatacta |
200 |
Q |
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| T |
5148270 |
tgcatgtccaaatcaacaaaagaagactcttacagcctaatatgaaagcgaacgcatgtacttcctaggcccacattcaacttgatctttatctatacta |
5148369 |
T |
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| Q |
201 |
gactagatagatctcatacatcgactatactttttacagaacaaattcaggtgagtttagatagttctaacaaaggtatttatatatatcatgcatgcat |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
5148370 |
gactagatagatctcatgcatcgactatactttttacagaacaaattcaggtgagtttagatagctctaacaaaggtatt--tatatatcatgcatgcat |
5148467 |
T |
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| Q |
301 |
caataagtttttatagtgaccacaagagtcgaattca |
337 |
Q |
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||||||||||||||||||||||||| ||||||||||| |
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| T |
5148468 |
caataagtttttatagtgaccacaacagtcgaattca |
5148504 |
T |
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