View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12009_high_22 (Length: 328)

Name: NF12009_high_22
Description: NF12009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12009_high_22
NF12009_high_22
[»] chr3 (3 HSPs)
chr3 (22-328)||(898727-899033)
chr3 (57-137)||(17663858-17663938)
chr3 (57-137)||(19246359-19246439)
[»] chr1 (11 HSPs)
chr1 (68-137)||(35213583-35213652)
chr1 (68-137)||(45526202-45526271)
chr1 (49-129)||(35192822-35192902)
chr1 (62-135)||(35203175-35203248)
chr1 (49-137)||(35216953-35217041)
chr1 (51-137)||(35295190-35295276)
chr1 (49-135)||(35476976-35477062)
chr1 (49-135)||(45534387-45534473)
chr1 (68-130)||(8640315-8640377)
chr1 (68-137)||(35206425-35206494)
chr1 (68-137)||(35222789-35222858)
[»] chr2 (1 HSPs)
chr2 (62-137)||(33137637-33137712)


Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 22 - 328
Target Start/End: Complemental strand, 899033 - 898727
Alignment:
Q  22 catcatcactatcatcatcactgtcaccatcaccgcaatgaatggtgagagatctggcagcaagcatgtaacatatttttccacttttcctatccaattt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  899033 catcatcactatcatcatcactgtcaccatcaccgcaatgaatggtgagagatctggcagcaagcatgtaacatatttttccacttttcctatccaattt 898934  T
Q  122 aaagctctgaatttcatatattcaaaggcttattagcattacgaaaacatcttaaatcaataagccttaataaaagagaaactaggtattacaaaaatca 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  898933 aaagctctgaatttcatatattcaaaggcttattagcattacgaaaacatcttaaatcaataagccttaataaaagagaaactagggattacaaaaaaca 898834  T
Q  222 atagttttttgcacaacaattgattaaaaattaatttttactaaaataaaccctaatatttgagaaattgacagttatgaaaaagaatacctttcgacca 321  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  898833 atagttttttgcacaacaattgattaaaaattaatatttactaaaataaaccctaatatttgagaaattgacagttatgaaaaagaatacctttcgacca 898734  T
Q  322 tgatcga 328  Q
    |||||||    
T  898733 tgatcga 898727  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 17663938 - 17663858
Alignment:
Q  57 caatgaatggtgagagatctggcagcaagcatgtaacatatttttccacttttcctatccaatttaaagctctgaatttca 137  Q
    |||| ||||||||||||||| |||||||||| ||||||  | | |||||| || || | ||||| ||||||||| ||||||    
T  17663938 caatcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttca 17663858  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 19246439 - 19246359
Alignment:
Q  57 caatgaatggtgagagatctggcagcaagcatgtaacatatttttccacttttcctatccaatttaaagctctgaatttca 137  Q
    |||| ||||||||||||||| |||||||||| ||||||  | | |||||| || || | ||||| ||||||||| ||||||    
T  19246439 caatcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttca 19246359  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 35213583 - 35213652
Alignment:
Q  68 gagagatctggcagcaagcatgtaacatatttttccacttttcctatccaatttaaagctctgaatttca 137  Q
    ||||||||| ||||||||||| |||||| ||||||||||||| || ||||||| ||||||||| ||||||    
T  35213583 gagagatctagcagcaagcatataacatttttttccactttttctctccaattgaaagctctgcatttca 35213652  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 45526202 - 45526271
Alignment:
Q  68 gagagatctggcagcaagcatgtaacatatttttccacttttcctatccaatttaaagctctgaatttca 137  Q
    ||||||||| |||||||||||||||||  |||||||||| || |||||||||| ||||||||| ||||||    
T  45526202 gagagatctagcagcaagcatgtaacacttttttccactctttctatccaattgaaagctctgcatttca 45526271  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 35192822 - 35192902
Alignment:
Q  49 catcaccgcaatgaatggtgagagatctggcagcaagcatgtaacatatttttccacttttcctatccaatttaaagctct 129  Q
    ||||||| |||  ||||| ||||||||| ||||||||||| |||||  |||||||||| ||||||||||||| ||||||||    
T  35192822 catcaccccaagcaatggagagagatctagcagcaagcatataacacttttttccactcttcctatccaattgaaagctct 35192902  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 35203175 - 35203248
Alignment:
Q  62 aatggtgagagatctggcagcaagcatgtaacatatttttccacttttcctatccaatttaaagctctgaattt 135  Q
    ||||| ||||||||| |||||||||||||||||  |||||||||| || |||||||||| || |||||| ||||    
T  35203175 aatggagagagatctagcagcaagcatgtaacacttttttccactctttctatccaattgaatgctctgcattt 35203248  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 35216953 - 35217041
Alignment:
Q  49 catcaccgcaatgaatggtgagagatctggcagcaagcatgtaacatatttttccacttttcctatccaatttaaagctctgaatttca 137  Q
    |||||||||||  ||||| ||||||||| |||| ||||||||||||  |||||||||| || ||||||||||  || ||||| ||||||    
T  35216953 catcaccgcaagcaatggagagagatctagcagaaagcatgtaacacttttttccactctttctatccaattggaaactctgcatttca 35217041  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 35295276 - 35295190
Alignment:
Q  51 tcaccgcaatgaatggtgagagatctggcagcaagcatgtaacatatttttccacttttcctatccaatttaaagctctgaatttca 137  Q
    ||||| |||| ||| ||||||||||| ||||||||||| |||||  |||| ||||| || || ||||||| ||||||||| ||||||    
T  35295276 tcaccccaattaatagtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttca 35295190  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 35476976 - 35477062
Alignment:
Q  49 catcaccgcaatgaatggtgagagatctggcagcaagcatgtaacatatttttccacttttcctatccaatttaaagctctgaattt 135  Q
    ||||||| |||  ||||| ||||||||| |||||||||||||||||  |||| ||||| || |||||||||| || |||||| ||||    
T  35476976 catcaccccaagcaatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatccaattgaaggctctgcattt 35477062  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 45534387 - 45534473
Alignment:
Q  49 catcaccgcaatgaatggtgagagatctggcagcaagcatgtaacatatttttccacttttcctatccaatttaaagctctgaattt 135  Q
    ||||||| |||  ||||| ||||||||| |||||||||||||||||  |||| ||||| || ||||| |||| ||||||||| ||||    
T  45534387 catcaccccaagtaatggcgagagatctagcagcaagcatgtaacactttttcccactatttctatctaattgaaagctctgcattt 45534473  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 8640315 - 8640377
Alignment:
Q  68 gagagatctggcagcaagcatgtaacatatttttccacttttcctatccaatttaaagctctg 130  Q
    ||||||||| |||||||||||||||||  |||||||||| || || ||||||| || ||||||    
T  8640315 gagagatctagcagcaagcatgtaacacttttttccactctttctgtccaattgaacgctctg 8640377  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 35206425 - 35206494
Alignment:
Q  68 gagagatctggcagcaagcatgtaacatatttttccacttttcctatccaatttaaagctctgaatttca 137  Q
    ||||||||| |||| ||||||||||||  |||||||||| || ||||||||||  || ||||| ||||||    
T  35206425 gagagatctagcagaaagcatgtaacacttttttccactctttctatccaattggaaactctgcatttca 35206494  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 35222789 - 35222858
Alignment:
Q  68 gagagatctggcagcaagcatgtaacatatttttccacttttcctatccaatttaaagctctgaatttca 137  Q
    ||||||||| ||||||||||||  |||  |||||||||| || |||||||||| || ||||| |||||||    
T  35222789 gagagatctagcagcaagcatgacacacttttttccactctttctatccaattgaacgctcttaatttca 35222858  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 33137712 - 33137637
Alignment:
Q  62 aatggtgagagatctggcagcaagcatgtaacatatttttccacttttcctatccaatttaaagctctgaatttca 137  Q
    ||||||||||||||| |||||||||||||||||  ||| |||||| || || | ||||| ||||||||| ||||||    
T  33137712 aatggtgagagatctagcagcaagcatgtaacacttttgtccactctttctgtgcaattgaaagctctgcatttca 33137637  T

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