View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12009_high_26 (Length: 322)

Name: NF12009_high_26
Description: NF12009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12009_high_26
NF12009_high_26
[»] chr7 (6 HSPs)
chr7 (21-322)||(18395924-18396234)
chr7 (76-135)||(27073633-27073692)
chr7 (76-135)||(27204621-27204680)
chr7 (26-88)||(23565300-23565363)
chr7 (28-129)||(40808414-40808517)
chr7 (26-122)||(36146661-36146759)
[»] chr8 (8 HSPs)
chr8 (28-143)||(11712244-11712361)
chr8 (41-122)||(32902442-32902524)
chr8 (41-119)||(29796578-29796656)
chr8 (93-174)||(7597380-7597462)
chr8 (93-143)||(8153572-8153622)
chr8 (66-119)||(3232092-3232145)
chr8 (66-143)||(8863333-8863409)
chr8 (67-115)||(18141659-18141706)
[»] chr2 (4 HSPs)
chr2 (28-143)||(4560904-4561021)
chr2 (66-110)||(28671797-28671841)
chr2 (26-111)||(11067134-11067221)
chr2 (41-115)||(36773387-36773462)
[»] scaffold0129 (1 HSPs)
scaffold0129 (42-122)||(19854-19933)
[»] chr4 (6 HSPs)
chr4 (66-181)||(21704109-21704225)
chr4 (66-181)||(3739397-3739511)
chr4 (28-115)||(6677306-6677394)
chr4 (41-122)||(36463657-36463738)
chr4 (76-119)||(4587792-4587835)
chr4 (88-121)||(43208174-43208207)
[»] chr1 (5 HSPs)
chr1 (41-115)||(8871315-8871390)
chr1 (71-127)||(2263271-2263327)
chr1 (41-117)||(28265821-28265898)
chr1 (93-141)||(25116407-25116455)
chr1 (26-92)||(49918210-49918278)
[»] chr5 (1 HSPs)
chr5 (66-140)||(5611451-5611524)
[»] chr3 (5 HSPs)
chr3 (66-140)||(21156738-21156811)
chr3 (66-119)||(40519479-40519532)
chr3 (66-119)||(2075350-2075403)
chr3 (71-115)||(9666754-9666797)
chr3 (66-122)||(37761765-37761820)


Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 18396234 - 18395924
Alignment:
Q  21 acatcatcaaagacattcaacctaaagttacctccttgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataa 120  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18396234 acatcaccaaagacattcaacctaaagttacctccttgatatccaaagtttctctctcttgaagctctacttaaaacatgaagaatgaagtcttatataa 18396135  T
Q  121 tgcacaagtcccgagaaaatcgtatcacaattttcactaattgtgccacgatttcaagttacttaaaatcgttccacgattttcctctttcgtgccacaa 220  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18396134 tgcacaagttccgagaaaatcgtatcacaattttcactaattgtgccacgatttcaagttacttaaaatcgttccacgattttcctctttcgtgccacaa 18396035  T
Q  221 tttttcgaatcaaa---------accttaaccaaaatcgcgtcacgatttttgcaaatcacggcccaatttttgtcgatattttagacaaatttcaacat 311  Q
    ||||||||||||||         ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  18396034 tttttcgaatcaaaacctccaaaaccttaaccaaaatctcgtcacgatttttgcaaatcgcggcccaatttttgtcgattttttagacaaatttcaacat 18395935  T
Q  312 ttgttttcctt 322  Q
    |||||||||||    
T  18395934 ttgttttcctt 18395924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 27073692 - 27073633
Alignment:
Q  76 ctcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgag 135  Q
    |||||||||  |||| |||||| |||||||||||||||||||||||||| ||| ||||||    
T  27073692 ctcttgaagtcctacctaaaacttgaagaatgaagtcttatataatgcaaaagccccgag 27073633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 27204621 - 27204680
Alignment:
Q  76 ctcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgag 135  Q
    |||||||||  |||| |||||| |||||||||||||||||||||||||| ||| ||||||    
T  27204621 ctcttgaagtcctacctaaaacttgaagaatgaagtcttatataatgcaaaagccccgag 27204680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 23565300 - 23565363
Alignment:
Q  26 atcaaagacattcaacctaaagttacctcctt-gatacccaaagtttctcactcttgaagctct 88  Q
    |||||||||  | ||||||||||||||||||| |||| || ||||||||| |||||||||||||    
T  23565300 atcaaagacccttaacctaaagttacctcctttgatatcccaagtttctctctcttgaagctct 23565363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 40808517 - 40808414
Alignment:
Q  28 caaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcac 125  Q
    |||||||| |||||| ||||||||||||||| ||| | | |||||| || ||||| |||  ||||||| |||||||||||||||||  ||||||  ||||    
T  40808517 caaagacactcaaccctaaagttacctcctttgattctctaagtttatctctctttaagtcctacttataacatgaagaatgaagttctatatagagcac 40808418  T
Q  126 aagt 129  Q
    ||||    
T  40808417 aagt 40808414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 36146661 - 36146759
Alignment:
Q  26 atcaaagacattcaac-ctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 122  Q
    |||||||||  ||||| |||||||||||||||| |||  || |||||| || ||||||||||||| |  |||| ||||||||||||| |||| ||||||    
T  36146661 atcaaagaccctcaacactaaagttacctcctttgatttcccaagtttttctctcttgaagctcttcccaaaaaatgaagaatgaagccttaaataatg 36146759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 11712244 - 11712361
Alignment:
Q  28 caaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcac 125  Q
    |||||||| |||||| |||||||||||| || ||||||| ||||||||| ||||||||||||||| |||||||| |||||||||  |||||||| |||||    
T  11712244 caaagacactcaaccctaaagttacctcatttgataccctaagtttctctctcttgaagctctacctaaaacataaagaatgaaaccttatatagtgcac 11712343  T
Q  126 aagtcccgagaaaatcgt 143  Q
    | ||||| ||||||||||    
T  11712344 atgtcccaagaaaatcgt 11712361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 32902442 - 32902524
Alignment:
Q  41 cctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 122  Q
    |||||||||||||| | ||||  || ||||||||| |||||||||| || || ||||||||||||||||||||||||| ||||    
T  32902442 cctaaagttacctcatctgatttcccaagtttctctctcttgaagccctcctcaaaacatgaagaatgaagtcttatacaatg 32902524  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 29796578 - 29796656
Alignment:
Q  41 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 119  Q
    ||||||||||||||||| |||  |  ||||||||| ||||||||| ||| || |||||||||||||||||| ||||||||    
T  29796578 cctaaagttacctcctttgatttctcaagtttctctctcttgaag-tctcctcaaaacatgaagaatgaagccttatata 29796656  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 7597462 - 7597380
Alignment:
Q  93 aaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaa-tcgtatcacaattttcactaattgtgccacgattt 174  Q
    |||||||||||||||||| |||||||| ||| ||| || |||||||| | ||  | | |||||||| ||||||||||||||||    
T  7597462 aaaacatgaagaatgaagccttatatagtgctcaaatctcgagaaaaattgtgccccgattttcaccaattgtgccacgattt 7597380  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 8153622 - 8153572
Alignment:
Q  93 aaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgt 143  Q
    |||||||||||||||||| ||| ||||||| |||||  |||||||||||||    
T  8153622 aaaacatgaagaatgaagccttttataatgtacaagatccgagaaaatcgt 8153572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 3232092 - 3232145
Alignment:
Q  66 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 119  Q
    ||||||||  ||||| | |||||||| |||||||||||||||||| ||||||||    
T  3232092 aagtttctttctcttaatgctctactcaaaacatgaagaatgaagccttatata 3232145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 8863409 - 8863333
Alignment:
Q  66 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgt 143  Q
    |||||| || |||||||||||| ||  |||||||||||||||||| |||||||| |||||| |  | |||||||||||    
T  8863409 aagtttttctctcttgaagctc-acccaaaacatgaagaatgaagccttatatagtgcacatgatctgagaaaatcgt 8863333  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 18141706 - 18141659
Alignment:
Q  67 agtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 115  Q
    |||||||| |||||||||||||||| |||| ||||||||||||| ||||    
T  18141706 agtttctctctcttgaagctctactcaaaa-atgaagaatgaagcctta 18141659  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 4561021 - 4560904
Alignment:
Q  28 caaagacattcaac-ctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcac 125  Q
    |||||||| ||||| ||||||||| ||||| ||||  || |||||| || ||||||||| | | || ||||||||||||||||||||||||| |||||||    
T  4561021 caaagacactcaactctaaagttatctcctctgatttcctaagtttttctctcttgaagttattctaaaaacatgaagaatgaagtcttatacaatgcac 4560922  T
Q  126 aagtcccgagaaaatcgt 143  Q
    ||||||||||||||||||    
T  4560921 aagtcccgagaaaatcgt 4560904  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 28671841 - 28671797
Alignment:
Q  66 aagtttctcactcttgaagctctacttaaaacatgaagaatgaag 110  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||    
T  28671841 aagtttctctctcttgaagccctactcaaaacatgaagaatgaag 28671797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 11067221 - 11067134
Alignment:
Q  26 atcaaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagt 111  Q
    |||||||||| |||||| ||||||||||||||| |||  ||  |||||||| |||||||||| || || |||| ||||||||||||||    
T  11067221 atcaaagacaatcaaccataaagttacctcctttgatttccctagtttctctctcttgaagccctcctcaaaaaatgaagaatgaagt 11067134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 36773462 - 36773387
Alignment:
Q  41 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 115  Q
    ||||||||||||||||| |||  ||  |||||||| ||||||||||||||   |||| ||||||||||||||||||    
T  36773462 cctaaagttacctcctttgatttccctagtttctctctcttgaagctctatacaaaaaatgaagaatgaagtctta 36773387  T

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Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 19854 - 19933
Alignment:
Q  42 ctaaagttacctccttgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 122  Q
    |||||||||||||||||||  || ||||||| | |||||||||| ||||| |||||| ||||||||||||| |||||||||    
T  19854 ctaaagttacctccttgatttcccaagtttcactctcttgaagc-ctactcaaaacaagaagaatgaagtcatatataatg 19933  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 181
Target Start/End: Original strand, 21704109 - 21704225
Alignment:
Q  66 aagtttctcactcttgaagc-tctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgtatcacaattttcactaattgt 164  Q
    ||||||||| |||||||||| |||||  |||||||||| |||||||||||| ||| |||||| |||| |  ||||||||  | |||||||  ||||| ||    
T  21704109 aagtttctctctcttgaagcctctacacaaaacatgaaaaatgaagtcttaaatagtgcacatgtcctgtcaaaatcgtgccccaattttacctaatcgt 21704208  T
Q  165 gccacgatttcaagtta 181  Q
    |||||||||||| ||||    
T  21704209 gccacgatttcacgtta 21704225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 181
Target Start/End: Original strand, 3739397 - 3739511
Alignment:
Q  66 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatcgtatcacaattttcactaattgtg 165  Q
    ||||||||| ||||||||  | |||| ||||||||||||||||||||||| |||||||||| ||||||  ||||||||  | | |||| |||  ||| ||    
T  3739397 aagtttctctctcttgaaa-tgtactcaaaacatgaagaatgaagtcttaaataatgcacatgtcccgtcaaaatcgtgcctcgatttacacacattttg 3739495  T
Q  166 ccacgatttcaagtta 181  Q
    ||||||||||| ||||    
T  3739496 ccacgatttcacgtta 3739511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 6677394 - 6677306
Alignment:
Q  28 caaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 115  Q
    |||||||| |||||| ||||||||||||||| ||||||| || ||||||  ||||||||| ||||| |||||||||||||||||| ||||    
T  6677394 caaagacactcaaccctaaagttacctcctttgataccctaaatttctctttcttgaagc-ctactcaaaacatgaagaatgaagcctta 6677306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 36463657 - 36463738
Alignment:
Q  41 cctaaagttacctcct-tgatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 122  Q
    |||||||||||||||| ||||  || |||||| || |||||||||||||||| |||| ||||||||||||| |||| ||||||    
T  36463657 cctaaagttacctcctatgatttcccaagtttttctctcttgaagctctactcaaaa-atgaagaatgaagccttaaataatg 36463738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 4587835 - 4587792
Alignment:
Q  76 ctcttgaagctctacttaaaacatgaagaatgaagtcttatata 119  Q
    ||||||||||||| || |||||||||||||||||||||| ||||    
T  4587835 ctcttgaagctctcctcaaaacatgaagaatgaagtcttttata 4587792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 121
Target Start/End: Original strand, 43208174 - 43208207
Alignment:
Q  88 tacttaaaacatgaagaatgaagtcttatataat 121  Q
    |||| |||||||||||||||||||||||||||||    
T  43208174 tactcaaaacatgaagaatgaagtcttatataat 43208207  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 8871315 - 8871390
Alignment:
Q  41 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtctta 115  Q
    ||||||||||||| ||| |||| ||  |||||||| |||||||||||||||  |||||||||||||||||| ||||    
T  8871315 cctaaagttacctgctttgatatccctagtttctctctcttgaagctctaccaaaaacatgaagaatgaagcctta 8871390  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 2263271 - 2263327
Alignment:
Q  71 tctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaa 127  Q
    |||| ||||||| |||||||  |||||||||||||||||| |||||||| |||||||    
T  2263271 tctctctcttgacgctctacacaaaacatgaagaatgaagccttatatagtgcacaa 2263327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 28265821 - 28265898
Alignment:
Q  41 cctaaagttacctcctt-gatacccaaagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttata 117  Q
    ||||||||||||||||| |||  ||  |||||||| ||||||||||||| |  |||| ||||||||||||| ||||||    
T  28265821 cctaaagttacctcctttgatttccctagtttctctctcttgaagctcttcccaaaaaatgaagaatgaagccttata 28265898  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 25116455 - 25116407
Alignment:
Q  93 aaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaatc 141  Q
    |||||||||||||||||| |||||||| |||||| | || |||||||||    
T  25116455 aaaacatgaagaatgaagacttatatagtgcacatgacctgagaaaatc 25116407  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 49918278 - 49918210
Alignment:
Q  26 atcaaagacattcaacc-taaagttacctcctt-gatacccaaagtttctcactcttgaagctctactt 92  Q
    ||||||||| ||||||| ||||||||||||||| |||  || ||||||||| ||||| |||||||||||    
T  49918278 atcaaagaccttcaaccctaaagttacctcctttgatttcccaagtttctctctcttcaagctctactt 49918210  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 5611451 - 5611524
Alignment:
Q  66 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaat 140  Q
    ||||||||| |||||||||||||  | ||||||||||||||||||||||| || ||| ||||| | |||||||||    
T  5611451 aagtttctctctcttgaagctctt-tcaaaacatgaagaatgaagtcttaaattatgtacaagactcgagaaaat 5611524  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 21156738 - 21156811
Alignment:
Q  66 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatgcacaagtcccgagaaaat 140  Q
    ||||||||| |||||||||||||  | ||||||||||||||||||||||| || ||| ||||| | |||||||||    
T  21156738 aagtttctctctcttgaagctctt-tcaaaacatgaagaatgaagtcttaaattatgtacaagactcgagaaaat 21156811  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 40519479 - 40519532
Alignment:
Q  66 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 119  Q
    ||||||||| |||||||||||||||| || |||||| |||||||| ||||||||    
T  40519479 aagtttctctctcttgaagctctactcaatacatgatgaatgaagccttatata 40519532  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 2075350 - 2075403
Alignment:
Q  66 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatata 119  Q
    ||||||||| ||||||||||   ||| |||||||||||||||||| ||||||||    
T  2075350 aagtttctctctcttgaagcctcactcaaaacatgaagaatgaagccttatata 2075403  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 9666754 - 9666797
Alignment:
Q  71 tctcactcttgaagctctacttaaaacatgaagaatgaagtctta 115  Q
    |||| |||||||||||||||| |||| ||||||||||||||||||    
T  9666754 tctctctcttgaagctctactcaaaa-atgaagaatgaagtctta 9666797  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 37761765 - 37761820
Alignment:
Q  66 aagtttctcactcttgaagctctacttaaaacatgaagaatgaagtcttatataatg 122  Q
    ||||| ||| |||||||||| | ||| |||||||||||||| |||||||||||||||    
T  37761765 aagttactctctcttgaagc-caactaaaaacatgaagaataaagtcttatataatg 37761820  T

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