View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12009_high_28 (Length: 317)
Name: NF12009_high_28
Description: NF12009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12009_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 288
Target Start/End: Original strand, 4632517 - 4632786
Alignment:
| Q |
17 |
atcattgcgagaatccactcaagaaagttgaacctgtttcttgtaattttttcccagcattatttgtatatgagtaagatcaaagttaaatccactgatt |
116 |
Q |
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| T |
4632517 |
atcattgcgagaatccactcaagaaagttgaacctgtttcttgtaattttttcccagcattatttgtat--gagtaagatcaaagttaaatccactgatt |
4632614 |
T |
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| Q |
117 |
tctctgcatattgcagaaaatatataatgcatctttattttctttgctatttggagctttataaattgaaatacttcatcccttcacacaaaaatgagat |
216 |
Q |
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| T |
4632615 |
tctctgcatattgcagaaaatatataatgcatctttactttctttgctatttggagctttataaattgaaatatttcatcctttcacacaaaaatgagat |
4632714 |
T |
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| Q |
217 |
aagaattataacataaataacatgttacaaatgcatcaggttgaatctctttaaggctataagagtcgaaaa |
288 |
Q |
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| T |
4632715 |
aagaattataacataaataacatgttacaaatgcatcaagttgaatctctttaaggctataagagtcaaaaa |
4632786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 29 - 288
Target Start/End: Original strand, 27590643 - 27590902
Alignment:
| Q |
29 |
atccactcaagaaagttgaacctgtttcttgtaattttttcccagcattatttgtatatgagtaagatcaaagttaaatccactgatttctctgcatatt |
128 |
Q |
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|||||||||||||||||| || |||||| ||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27590643 |
atccactcaagaaagttggacatgtttcatgtaatttttttcgagcattatttgtatatgagtaagatcaaag--aaatccactgatttctctgcatatt |
27590740 |
T |
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| Q |
129 |
gcagaaaatatataatgcatctttattttctttgctatttggagctttataaattgaaatacttcatcccttcacac-aaaaatgagataagaattataa |
227 |
Q |
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| T |
27590741 |
gcagaaaacatacaatgcgtctttactttctttgccatttggagctttatgagttgaaatatctcatcctttcacacaaaaaatgagataagaattacaa |
27590840 |
T |
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| Q |
228 |
cataaataacatgttacaaatgcatcaggttgaatctcttta-aggctataagagtcgaaaa |
288 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| |
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| T |
27590841 |
cataaataacatgttacaaatgcatcaagttgaatctctttagaggctataagagtccaaaa |
27590902 |
T |
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