View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12009_high_5 (Length: 476)
Name: NF12009_high_5
Description: NF12009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12009_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 86 - 464
Target Start/End: Original strand, 6241740 - 6242124
Alignment:
| Q |
86 |
ggaattgaccaagatcttgcataacctgcttaatctgtaaagctagctcgttggttggggccaaaaccaaagcctggcaatgagccaattcataatcaag |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6241740 |
ggaattgaccaagatcttgcataacctgcttaatctgtaaagctagctcgttggttggggccaaaaccaaagcctggcaatgagccaattcataatcaag |
6241839 |
T |
|
| Q |
186 |
catcttcagaattccaatacagaatgttgctgacatcccggttccagatggatcctgtagaatcacatcctggccttcgcagaaaggaggaattaccatt |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
6241840 |
catcttcagaattccaatacagaatgttgctgacatcccggttccagatggatcctgtagaatcacatcgtggcctttgcagaaaggaggaattaccatt |
6241939 |
T |
|
| Q |
286 |
ttctgaattgaagagggcctcccaaattcttcacaacagaataaaaaacatcacacacataattttgtgaaaactgtagctagagtaacatatatt---- |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
6241940 |
ttctgaattgaagagggcctcccaaattcttcacaacagaataaaaaacatcacacacatgattttgtgaaaactgtagctagagtaacatacattgttt |
6242039 |
T |
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| Q |
382 |
--aacattactaatctcatattcaaaacaatacaaagttcagaaaatatattggattttcaatcatatattggtgcaattatttt |
464 |
Q |
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| T |
6242040 |
taaacatacataatctcatattcaaaacaatacaaagttcagaaaatatattggattttcaatcatatattggtgcaattatttt |
6242124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 126 - 273
Target Start/End: Original strand, 6250712 - 6250859
Alignment:
| Q |
126 |
agctagctcgttggttggggccaaaaccaaagcctggcaatgagccaattcataatcaagcatcttcagaattccaatacagaatgttgctgacatcccg |
225 |
Q |
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| T |
6250712 |
agctagctcccttgttggggccaaaaccaaggcctggcactgaactaatccataatcaagctgctgcaaaattccagagcagaatgttgctgtcttccca |
6250811 |
T |
|
| Q |
226 |
gttccagatggatcctgtagaatcacatcctggccttcgcagaaagga |
273 |
Q |
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|||||||| || ||||| ||||||||||| | |||| |||||||||| |
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| T |
6250812 |
gttccagactgagcctgttgaatcacatccagacctttgcagaaagga |
6250859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 381
Target Start/End: Original strand, 6226846 - 6226940
Alignment:
| Q |
292 |
attgaagagggcctcccaaattcttc-acaacagaat--aaaaaacatcacacacataattttgtgaaaac--tgtagctagagtaacatatatt |
381 |
Q |
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|||||||||||||||||||| |||| |||||||| ||||||||||| ||| || ||||||||||||| |||||| |||||| |||||||| |
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| T |
6226846 |
attgaagagggcctcccaaaaccttcggaaacagaataaaaaaaacatcatacatatgattttgtgaaaactgtgtagcaagagtagcatatatt |
6226940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 93 - 362
Target Start/End: Complemental strand, 17544651 - 17544382
Alignment:
| Q |
93 |
accaagatcttgcataacctgcttaatctgtaaagctagctcgttggttggggccaaaaccaaagcctggcaatgagccaattcataatcaagcatcttc |
192 |
Q |
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|||||||||||||||||||| ||||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |
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| T |
17544651 |
accaagatcttgcataacctccttaatctgtaaaaccagctccatggttggggccaaaaccaaagcctggcaatgaaccaatccataatcaagcttcttc |
17544552 |
T |
|
| Q |
193 |
agaattccaatacagaatgttgctgacatcccggttccagatggatcctgtagaatcacatcctggccttcgcagaaaggaggaattaccattttctgaa |
292 |
Q |
| |
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||||||||||||||||||||| || ||||||| |||||| ||||||| |||||||||||| || ||||| |||||||||| ||||||| ||| ||| | |
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| T |
17544551 |
agaattccaatacagaatgtttctaacatcccagttccatatggatcttgtagaatcacacccaaaccttcacagaaaggagcaattaccctttgctgga |
17544452 |
T |
|
| Q |
293 |
ttgaagagggcctcccaaattcttca-caacagaataaaaaacatcacacacataattttgtgaaaactgt |
362 |
Q |
| |
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||||||||||||||||||| ||||| |||||||||||||||||||||||| | |||||||||||||||| |
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| T |
17544451 |
ttgaagagggcctcccaaaaccttcagaaacagaataaaaaacatcacacac-tgattttgtgaaaactgt |
17544382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 241 - 362
Target Start/End: Original strand, 272999 - 273121
Alignment:
| Q |
241 |
tgtagaatcacatcctggccttcgcagaaaggaggaattaccattttctgaattgaagagggcctcccaaattcttca-caacagaataaaaaacatcac |
339 |
Q |
| |
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|||| |||||||||| ||||| |||||||||| ||||||||||| ||| |||||||| ||||||||||| ||||| ||||||||||||||||| || |
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| T |
272999 |
tgtaaaatcacatccaaaccttcacagaaaggagcaattaccatttgctggattgaagaaggcctcccaaaaccttcagaaacagaataaaaaacattac |
273098 |
T |
|
| Q |
340 |
acacataattttgtgaaaactgt |
362 |
Q |
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|||||| |||||||||||||||| |
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| T |
273099 |
acacatgattttgtgaaaactgt |
273121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 241 - 362
Target Start/End: Complemental strand, 875211 - 875089
Alignment:
| Q |
241 |
tgtagaatcacatcctggccttcgcagaaaggaggaattaccattttctgaattgaagagggcctcccaaattcttca-caacagaataaaaaacatcac |
339 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||| ||||||||||| ||| |||||||| ||||||||||| ||||| ||||||||||||||||| || |
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| T |
875211 |
tgtaaaatcacatccaaaccttcacagaaaggagcaattaccatttgctggattgaagaaggcctcccaaaaccttcagaaacagaataaaaaacattac |
875112 |
T |
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| Q |
340 |
acacataattttgtgaaaactgt |
362 |
Q |
| |
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| |||| |||||||||||||||| |
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| T |
875111 |
atacatgattttgtgaaaactgt |
875089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 42717803 - 42717756
Alignment:
| Q |
139 |
gttggggccaaaaccaaagcctggcaatgagccaattcataatcaagc |
186 |
Q |
| |
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|||||||||||||||||||||||||| ||| |||| ||||||||||| |
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| T |
42717803 |
gttggggccaaaaccaaagcctggcactgaaccaaaccataatcaagc |
42717756 |
T |
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