View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12009_high_8 (Length: 407)
Name: NF12009_high_8
Description: NF12009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12009_high_8 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 30 - 407
Target Start/End: Complemental strand, 53491649 - 53491272
Alignment:
| Q |
30 |
gcatttatattttcgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgact |
129 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
53491649 |
gcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcaact |
53491550 |
T |
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| Q |
130 |
caagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgatacttgtaaagcaactgcgaatatgttgtgtgaagcaaaaaata |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53491549 |
caagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaata |
53491450 |
T |
|
| Q |
230 |
cgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaagg |
329 |
Q |
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| T |
53491449 |
cgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaagg |
53491350 |
T |
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| Q |
330 |
atttagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactg |
407 |
Q |
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| T |
53491349 |
atttagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactg |
53491272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 30 - 405
Target Start/End: Complemental strand, 53499242 - 53498870
Alignment:
| Q |
30 |
gcatttatattttcgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgact |
129 |
Q |
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||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
53499242 |
gcatttatattttagtccgcttatttaacagattggagcaatggtgatggttcatggcgatgacaagggattggtgctacctcctaaagtagcatcaact |
53499143 |
T |
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| Q |
130 |
caagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgatacttgtaaagcaactgcgaatatgttgtgtgaagcaaaaaata |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| |||||| |
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| T |
53499142 |
caagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgctgtgtgaagca-aaaata |
53499044 |
T |
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| Q |
230 |
cgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaagg |
329 |
Q |
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| T |
53499043 |
cgtgctgagttagattctagagatagctactctcctgaaaagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatgg |
53498944 |
T |
|
| Q |
330 |
atttagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctac |
405 |
Q |
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| T |
53498943 |
atttagaaaataaacaggttatctatgttgtcctgttgttgctcttatattct--cacatgtcattttgcttctac |
53498870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 55 - 401
Target Start/End: Complemental strand, 16070303 - 16069958
Alignment:
| Q |
55 |
taacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgcctt |
154 |
Q |
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| T |
16070303 |
taacagattggagtgatggtgatggttcatggtgatgacaagggattggtgctaccgcctaaagtagcatcaactcaagtcattgtgattccagtgcctt |
16070204 |
T |
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| Q |
155 |
acaaagatgttgatactcaaggaatctatgatacttgtaaagcaactgcgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagata |
254 |
Q |
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| T |
16070203 |
acaaaaacgttgattgtgaaggaatcaatgacgcttgtaaagcagccgtgaagatgttgcgtgaag-aaaaaattcgtgccgagttagattctagagata |
16070105 |
T |
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| Q |
255 |
actgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatcta |
354 |
Q |
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||| ||||| |||||| ||||||||||| |||||| |||||||||||||| ||| | |||||||||||| ||||| ||||| ||||||||||||||| | |
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| T |
16070104 |
actattctcttgaaagaaagtattctgaatgggaaatgaaaggtgtccctttaatggttgaaattgggctaaagggtttaggaaataagcaggttattaa |
16070005 |
T |
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| Q |
355 |
tgttgtcttgttgttgctcttatattcttacatatgtcattttgctt |
401 |
Q |
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| T |
16070004 |
tgttgttatattattgcacttgtattctttcatatgtcattatgctt |
16069958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 53516516 - 53516478
Alignment:
| Q |
277 |
ttctgattgggaattgaaaggtgtccctctaaggattga |
315 |
Q |
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|||||| |||||| ||||||||||||||||||||||||| |
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| T |
53516516 |
ttctgaatgggaaatgaaaggtgtccctctaaggattga |
53516478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 47 - 348
Target Start/End: Original strand, 45355140 - 45355440
Alignment:
| Q |
47 |
cgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattcc |
146 |
Q |
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|||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| |
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| T |
45355140 |
cgctttttcaacagattggggtgatggtgatggttcatggtgatgacaagggattggtgctgccacctaaagtagcatcagttcaagtcattgtgattcc |
45355239 |
T |
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| Q |
147 |
agtgccttacaaagatgttgatactcaaggaatctatgatacttgtaaagcaactgcgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattc |
246 |
Q |
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|||||||||||||||| ||||||||||||||||| |||| | |||| ||||||| ||||||||||| ||||| | ||| |||||||||| |||| | |
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| T |
45355240 |
tgtgccttacaaagatgctgatactcaaggaatctttgatgcctgtaccgcaactgtgaatatgttgttggaagc-aggaattcgtgctgagtcagatgc |
45355338 |
T |
|
| Q |
247 |
tagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcag |
346 |
Q |
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||||| |||| |||||||| | |||| |||||| | |||||| |||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||| |
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| T |
45355339 |
cagagacaactattctcctggatggaaatattctcagtgggaaatgaaaggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcag |
45355438 |
T |
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| Q |
347 |
gt |
348 |
Q |
| |
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|| |
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| T |
45355439 |
gt |
45355440 |
T |
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