View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1200_high_1 (Length: 678)

Name: NF1200_high_1
Description: NF1200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1200_high_1
NF1200_high_1
[»] chr2 (6 HSPs)
chr2 (92-678)||(4142299-4142906)
chr2 (371-480)||(4146834-4146943)
chr2 (625-671)||(31456654-31456700)
chr2 (625-678)||(19573971-19574024)
chr2 (625-678)||(21616755-21616808)
chr2 (630-678)||(16069272-16069320)
[»] chr8 (3 HSPs)
chr8 (625-677)||(14634154-14634206)
chr8 (625-676)||(7658458-7658509)
chr8 (625-678)||(4786351-4786404)
[»] chr7 (8 HSPs)
chr7 (630-678)||(27945034-27945082)
chr7 (620-678)||(5235979-5236037)
chr7 (632-678)||(21141002-21141048)
chr7 (634-676)||(7758317-7758359)
chr7 (625-678)||(22868035-22868088)
chr7 (630-678)||(28155563-28155611)
chr7 (630-678)||(29787387-29787435)
chr7 (630-678)||(32308113-32308161)
[»] chr5 (3 HSPs)
chr5 (630-678)||(15410466-15410514)
chr5 (630-677)||(27932229-27932276)
chr5 (630-678)||(34879343-34879391)
[»] chr6 (4 HSPs)
chr6 (625-678)||(9658872-9658925)
chr6 (635-673)||(322517-322555)
chr6 (625-670)||(8389485-8389530)
chr6 (625-678)||(19040345-19040398)
[»] chr3 (5 HSPs)
chr3 (625-678)||(8039848-8039901)
chr3 (625-678)||(8383250-8383303)
chr3 (625-678)||(12704000-12704053)
chr3 (630-678)||(9800033-9800081)
chr3 (630-678)||(16000034-16000082)
[»] scaffold0004 (1 HSPs)
scaffold0004 (630-678)||(92800-92848)
[»] chr1 (6 HSPs)
chr1 (630-678)||(5376518-5376566)
chr1 (636-678)||(609482-609524)
chr1 (624-678)||(34298429-34298483)
chr1 (625-678)||(36878454-36878507)
chr1 (630-678)||(9828037-9828085)
chr1 (630-678)||(10572607-10572655)
[»] chr4 (3 HSPs)
chr4 (620-674)||(21539875-21539929)
chr4 (625-678)||(36635317-36635370)
chr4 (630-674)||(17446068-17446112)
[»] scaffold0039 (1 HSPs)
scaffold0039 (625-678)||(84986-85039)


Alignment Details
Target: chr2 (Bit Score: 470; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 92 - 678
Target Start/End: Original strand, 4142299 - 4142906
Alignment:
Q  92 caatatggagaagaaggacttaaagggcaagtaccaccacggcctcaagatgctacattcttccaaagtggagatgggccaacaacgtttaggttcaatc 191  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142299 caatatggagaagaaggacttaaagggcaagtaccaccac---ctcaagatgctacattcttccaaagtggagatgggccaacaacgtttaggttcaatc 4142395  T
Q  192 caagaaacgcaaacgatatctttgcagagtttttcgggttttcaagtccgtttggaggaatgggagctggtgggaatggaatgagaggtggagtaaggtc 291  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4142396 caagaaatgcaaacgatatctttgcagagtttttcgggttttcaagtccgtttggaggaatgggagctggtgggaatggaatgagaggtggagcaaggtc 4142495  T
Q  292 ctttggtggaatgtttggtggtgatgatcatatgttttcttcatttgatgaaggtaggcctatgcgtcagcagggtcctcgcaaggcagctgctattgaa 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142496 ctttggtggaatgtttggtggtgatgatcatatgttttcttcatttgatgaaggtaggcctatgcgtcagcagggtcctcgcaaggcagctgctattgaa 4142595  T
Q  392 aatagattgccttgtagtcttgaggaactctataaagggactaccaaaaagatgaagatttcaagggaaattgcagatgcaagtgggtatgtattctttg 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4142596 aatagattgccttgtagtcttgaggaactctataaagggactaccaaaaagatgaagatttcaagggaaattgcagatgcaagtgggtatgtattatttg 4142695  T
Q  492 cataaaatttcattccattc----tattgttagagtttaaccttttagcaattaacaatgttat--------------tacatgttggttgattattcta 573  Q
    ||||||||||||||||||||    |||||||||||| |||||||||||||||||||||||||||              ||||||||||||||||||||||    
T  4142696 cataaaatttcattccattctatttattgttagagtctaaccttttagcaattaacaatgttatttgttgtaaatcactacatgttggttgattattcta 4142795  T
Q  574 aacagtgttactatgaagcattagccatgcttcacgtccaacatttatatgtatatttacactgaatt------atataattttcttaaattgttagtgg 667  Q
    |||||||||||||||||||||||||||||||||||||||  ||   | ||||||||||||||||||||      ||||||||||||||||||||||||||    
T  4142796 aacagtgttactatgaagcattagccatgcttcacgtccgtcaccaacatgtatatttacactgaattatataaatataattttcttaaattgttagtgg 4142895  T
Q  668 tgtcggcgtgt 678  Q
    |||||||||||    
T  4142896 tgtcggcgtgt 4142906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 371 - 480
Target Start/End: Original strand, 4146834 - 4146943
Alignment:
Q  371 cgcaaggcagctgctattgaaaatagattgccttgtagtcttgaggaactctataaagggactaccaaaaagatgaagatttcaagggaaattgcagatg 470  Q
    ||||||||| || | |||||||||| ||||||||| || ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| | |    
T  4146834 cgcaaggcacctcccattgaaaataaattgccttgcagccttgaggaactttataaaggcactaccaaaaagatgaagatctcaagggaaattgcatacg 4146933  T
Q  471 caagtgggta 480  Q
    |||| |||||    
T  4146934 caagcgggta 4146943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 625 - 671
Target Start/End: Original strand, 31456654 - 31456700
Alignment:
Q  625 tatatttacactgaattatataattttcttaaattgttagtggtgtc 671  Q
    |||| ||||||||||||| |||||||||||||||| |||| ||||||    
T  31456654 tataattacactgaattacataattttcttaaattattagcggtgtc 31456700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 678
Target Start/End: Complemental strand, 19574024 - 19573971
Alignment:
Q  625 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||| |||||||||||||| | ||||||||||||| |||  |||||||||||||    
T  19574024 tataattacactgaattatgttattttcttaaattattatcggtgtcggcgtgt 19573971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 678
Target Start/End: Complemental strand, 21616808 - 21616755
Alignment:
Q  625 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||| |||||||||||||| | ||||||| ||||| |||| |||||||||||||    
T  21616808 tataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgt 21616755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 630 - 678
Target Start/End: Original strand, 16069272 - 16069320
Alignment:
Q  630 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||||||||||||||| ||||| ||||||| |||  |||||||||||||    
T  16069272 ttacactgaattatatgatttttttaaattattaacggtgtcggcgtgt 16069320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 625 - 677
Target Start/End: Original strand, 14634154 - 14634206
Alignment:
Q  625 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtg 677  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  14634154 tataattacactgaattatataattttcttaaattgttagcggtgtcgacgtg 14634206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 625 - 676
Target Start/End: Complemental strand, 7658509 - 7658458
Alignment:
Q  625 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgt 676  Q
    |||| |||||||||||||| ||||||||| ||||| ||||||||||||||||    
T  7658509 tataattacactgaattatgtaattttctcaaattattagtggtgtcggcgt 7658458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 625 - 678
Target Start/End: Original strand, 4786351 - 4786404
Alignment:
Q  625 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||| |||||||||||||| | ||||||||||||| ||| ||||||||||||||    
T  4786351 tataattacactgaattatgtgattttcttaaattattaatggtgtcggcgtgt 4786404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 630 - 678
Target Start/End: Complemental strand, 27945082 - 27945034
Alignment:
Q  630 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  27945082 ttacactgaattatgtaattttctcaaattattagtggtgtcggcgtgt 27945034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 678
Target Start/End: Complemental strand, 5236037 - 5235979
Alignment:
Q  620 atatgtatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||| |||| ||||||| |||||||||||||||||||||| |||| ||||||| |||||    
T  5236037 atatatataattacactaaattatataattttcttaaattattagcggtgtcgacgtgt 5235979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 632 - 678
Target Start/End: Original strand, 21141002 - 21141048
Alignment:
Q  632 acactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||||||||||||| ||||||||||||| |||||||||||| |||||    
T  21141002 acactgaattatatgattttcttaaattattagtggtgtcgacgtgt 21141048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 634 - 676
Target Start/End: Complemental strand, 7758359 - 7758317
Alignment:
Q  634 actgaattatataattttcttaaattgttagtggtgtcggcgt 676  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||    
T  7758359 actgaattatataattttctaaaattattagtggtgtcagcgt 7758317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 678
Target Start/End: Complemental strand, 22868088 - 22868035
Alignment:
Q  625 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||| |||||||||||||| | ||||||| | ||| ||||||||||||||||||    
T  22868088 tataattacactgaattatgtgattttctcatattattagtggtgtcggcgtgt 22868035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 630 - 678
Target Start/End: Complemental strand, 28155611 - 28155563
Alignment:
Q  630 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||||| ||||||| ||||||||| ||||| |||| |||||||||||||    
T  28155611 ttacaccgaattatgtaattttctcaaattattagcggtgtcggcgtgt 28155563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 630 - 678
Target Start/End: Original strand, 29787387 - 29787435
Alignment:
Q  630 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||||||||||||| | ||||||| ||||| |||| |||||||||||||    
T  29787387 ttacactgaattatgtgattttctcaaattattagcggtgtcggcgtgt 29787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 630 - 678
Target Start/End: Complemental strand, 32308161 - 32308113
Alignment:
Q  630 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||||||||||||| | ||||||| ||||| |||| |||||||||||||    
T  32308161 ttacactgaattatgtgattttctcaaattattagcggtgtcggcgtgt 32308113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 630 - 678
Target Start/End: Original strand, 15410466 - 15410514
Alignment:
Q  630 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    ||||||||||| |||||||||||||||||| |||| |||||||||||||    
T  15410466 ttacactgaatcatataattttcttaaattattagcggtgtcggcgtgt 15410514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 630 - 677
Target Start/End: Complemental strand, 27932276 - 27932229
Alignment:
Q  630 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtg 677  Q
    |||||||||||||| ||||||||| ||||| |||| ||||||||||||    
T  27932276 ttacactgaattatgtaattttctcaaattattagcggtgtcggcgtg 27932229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 630 - 678
Target Start/End: Complemental strand, 34879391 - 34879343
Alignment:
Q  630 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||||||||||||||| ||||||| ||||| |||| |||| ||||||||    
T  34879391 ttacactgaattatatgattttctcaaatttttagcggtgccggcgtgt 34879343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 625 - 678
Target Start/End: Complemental strand, 9658925 - 9658872
Alignment:
Q  625 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||| |||||||||||||| | ||||||||||||| |||| |||||||||||||    
T  9658925 tataattacactgaattatgtgattttcttaaattattagcggtgtcggcgtgt 9658872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 635 - 673
Target Start/End: Complemental strand, 322555 - 322517
Alignment:
Q  635 ctgaattatataattttcttaaattgttagtggtgtcgg 673  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  322555 ctgaattatgtaattttcttaaattattagtggtgtcgg 322517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 670
Target Start/End: Original strand, 8389485 - 8389530
Alignment:
Q  625 tatatttacactgaattatataattttcttaaattgttagtggtgt 670  Q
    |||| |||||||||||||||| ||||||||||||| ||||| ||||    
T  8389485 tataattacactgaattatatgattttcttaaattattagtagtgt 8389530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 678
Target Start/End: Complemental strand, 19040398 - 19040345
Alignment:
Q  625 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||| |||||||||||||| | ||||||| ||||| |||| |||||||||||||    
T  19040398 tataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgt 19040345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 625 - 678
Target Start/End: Original strand, 8039848 - 8039901
Alignment:
Q  625 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||| |||||||||||||||||||||||| ||||| |||| ||||| |||||||    
T  8039848 tataattacactgaattatataattttctcaaattattagcggtgttggcgtgt 8039901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 625 - 678
Target Start/End: Complemental strand, 8383303 - 8383250
Alignment:
Q  625 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||| |||||||||||||||| ||||||| ||||| |||| |||||||||||||    
T  8383303 tataattacactgaattatatgattttctcaaattattagcggtgtcggcgtgt 8383250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 678
Target Start/End: Complemental strand, 12704053 - 12704000
Alignment:
Q  625 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||| |||||||||||||| |  |||||| ||||| ||||||||||||||||||    
T  12704053 tataattacactgaattatgtgcttttctcaaattattagtggtgtcggcgtgt 12704000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 630 - 678
Target Start/End: Complemental strand, 9800081 - 9800033
Alignment:
Q  630 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||||| ||||||| ||||||||| ||||| |||| |||||||||||||    
T  9800081 ttacacggaattatgtaattttctcaaattattagaggtgtcggcgtgt 9800033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 630 - 678
Target Start/End: Original strand, 16000034 - 16000082
Alignment:
Q  630 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||||||||||||| | ||||| ||||||| ||||| ||||||||||||    
T  16000034 ttacactgaattatgttatttttttaaattattagttgtgtcggcgtgt 16000082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 630 - 678
Target Start/End: Complemental strand, 92848 - 92800
Alignment:
Q  630 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||||||||||||| ||||||||| ||||| |||| |||||||||||||    
T  92848 ttacactgaattatgtaattttctcaaattattagcggtgtcggcgtgt 92800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 630 - 678
Target Start/End: Original strand, 5376518 - 5376566
Alignment:
Q  630 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||||||||||||| | ||||||||||||| |||| |||||||||||||    
T  5376518 ttacactgaattatgttattttcttaaattattagcggtgtcggcgtgt 5376566  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 636 - 678
Target Start/End: Original strand, 609482 - 609524
Alignment:
Q  636 tgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||    
T  609482 tgaattatgtaattttctcaaattattagtggtgtcggcgtgt 609524  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 624 - 678
Target Start/End: Complemental strand, 34298483 - 34298429
Alignment:
Q  624 gtatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    ||||| |||||||||||||| | ||||||| ||||| ||||||||||||| ||||    
T  34298483 gtataattacactgaattatgtgattttctcaaattattagtggtgtcggtgtgt 34298429  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 678
Target Start/End: Complemental strand, 36878507 - 36878454
Alignment:
Q  625 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||| |||||||||||||| | ||||||| ||||| |||| |||||||||||||    
T  36878507 tataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgt 36878454  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 630 - 678
Target Start/End: Complemental strand, 9828085 - 9828037
Alignment:
Q  630 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||||||||||||| | ||||| | ||||| ||||||||||||||||||    
T  9828085 ttacactgaattatgtgattttatcaaattattagtggtgtcggcgtgt 9828037  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 630 - 678
Target Start/End: Original strand, 10572607 - 10572655
Alignment:
Q  630 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||||| ||||||| | ||||||| ||||| ||||||||||||||||||    
T  10572607 ttacaccgaattatgtgattttctcaaattattagtggtgtcggcgtgt 10572655  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 674
Target Start/End: Original strand, 21539875 - 21539929
Alignment:
Q  620 atatgtatatttacactgaattatataattttcttaaattgttagtggtgtcggc 674  Q
    |||| |||| ||||||| |||||||| ||||||||||||| ||| ||||||||||    
T  21539875 atatatataattacactaaattatatgattttcttaaattattaatggtgtcggc 21539929  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 678
Target Start/End: Complemental strand, 36635370 - 36635317
Alignment:
Q  625 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||| |||||||||||||| | ||||||| ||||| |||||||||| |||||||    
T  36635370 tataattacactgaattatgtgattttctcaaattattagtggtgttggcgtgt 36635317  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 630 - 674
Target Start/End: Complemental strand, 17446112 - 17446068
Alignment:
Q  630 ttacactgaattatataattttcttaaattgttagtggtgtcggc 674  Q
    ||||||| |||||| | ||||||||||||| ||||||||||||||    
T  17446112 ttacactaaattatgtgattttcttaaattattagtggtgtcggc 17446068  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 678
Target Start/End: Original strand, 84986 - 85039
Alignment:
Q  625 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 678  Q
    |||| ||||||  |||||||| |||||||||||||  |||||||||||||||||    
T  84986 tataattacacataattatatgattttcttaaattagtagtggtgtcggcgtgt 85039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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