View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1200_high_10 (Length: 457)
Name: NF1200_high_10
Description: NF1200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1200_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 48 - 441
Target Start/End: Original strand, 19977744 - 19978137
Alignment:
| Q |
48 |
tatttgtagtgacatgtgatagcattttggagtaataagttgaaaaatgtatctggtggagagcaagggtggtgcaatagtatgcatgttgtttagcttg |
147 |
Q |
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| T |
19977744 |
tatttgtagtgacatgtgatagcattttggagtaataagttgaaaaatgtatctggtggagagcaagggtggtgccatagtatgcatgttgtttagcctg |
19977843 |
T |
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| Q |
148 |
ttctttttggggacatggcctgctgtgatgaatctattggaaaggagaggtcgtcttcctcaacacacctatcttgactacaccattgctaatttcttgg |
247 |
Q |
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| T |
19977844 |
ttctttttggggacatggcctgctgtgatgaatctattggaaaggagaggtcgtcttcctcaacacacctatcttgactacaccattgctaatttcttgg |
19977943 |
T |
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| Q |
248 |
ctgctgttatcattgctttcacctttggtcaaataggcactgatgacccaaacttcttgtctcaactttctcaggtgtgtgtatccactttctctggtgg |
347 |
Q |
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| T |
19977944 |
ctgctgttatcattgctttcacctttggtcaaataggcactgatgacccaaacttcttgtctcaactttctcaggtgtgtgtatccactttctctggtgg |
19978043 |
T |
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| Q |
348 |
tctttctcaatacacaaccatctaaaaatgcaagaatttatgagtgtggtgtggtgtttgatgcaggataacttgccttctgttctatttgcaa |
441 |
Q |
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| T |
19978044 |
tctttctcaatacacaaccatctaaaaatgcaagaatttatgagtgtggtgtggtgtttgatgcaggataacttgccttctgttctatttgcaa |
19978137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 85 - 323
Target Start/End: Original strand, 19620395 - 19620633
Alignment:
| Q |
85 |
agttgaaaaatgtatctggtggagagcaagggtggtgcaatagtatgcatgttgtttagcttgttctttttggggacatggcctgctgtgatgaatctat |
184 |
Q |
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| T |
19620395 |
agttgaaaaatgtatatggtagagagcaggggaggtgccatagtatgcatgctggtttccttgttcttcttagggacatggccagctgtgatgactttat |
19620494 |
T |
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| Q |
185 |
tggaaaggagaggtcgtcttcctcaacacacctatcttgactacaccattgctaatttcttggctgctgttatcattgctttcacctttggtcaaatagg |
284 |
Q |
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| T |
19620495 |
tggaaaggagaggtcgtcttcctcagcacacctatcttgactacaccatcactaatctcttggcggctgttatcattgctttcacctttggtcaaatagg |
19620594 |
T |
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| Q |
285 |
cactgatgacccaaacttcttgtctcaactttctcaggt |
323 |
Q |
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| T |
19620595 |
cactgatcatcctaacttcttgtctcaactttctcaggt |
19620633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 91 - 284
Target Start/End: Complemental strand, 19975451 - 19975258
Alignment:
| Q |
91 |
aaaatgtatctggtggagagcaagggtggtgcaatagtatgcatgttgtttagct-tgttctttttggggacatggcctgctgtgatgaatctattggaa |
189 |
Q |
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||||||||| |||||||||||||||| ||||| |||| || ||| |||| ||| | ||||| || ||||||||||||||||| ||| ||| || ||| |
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| T |
19975451 |
aaaatgtatttggtggagagcaagggaggtgccatagggtgtatgctgttg-gctcttttcttcttagggacatggcctgctgttttgactctgttagaa |
19975353 |
T |
|
| Q |
190 |
aggagaggtcgtcttcctcaacacacctatcttgactacaccattgctaatttcttggctgctgttatcattgctttcacctttggtcaaatagg |
284 |
Q |
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||| |||| |||||||||||||| ||||| || || ||| | || ||||||||||||||||| ||||||||||||| || |||||||| ||||| |
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| T |
19975352 |
aggcgaggccgtcttcctcaacatacctacctcgattactcaatcactaatttcttggctgctattatcattgcttttacatttggtcagatagg |
19975258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 397 - 439
Target Start/End: Original strand, 19621811 - 19621853
Alignment:
| Q |
397 |
tgtggtgtttgatgcaggataacttgccttctgttctatttgc |
439 |
Q |
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| T |
19621811 |
tgtgatgtttgatgcaggataacttgccttctgttctatttgc |
19621853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 4143031 - 4142985
Alignment:
| Q |
6 |
aaactggaccttatttcctaaacataagactcattgatgtcctattt |
52 |
Q |
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| T |
4143031 |
aaactggaccttatttcctaaacataagactcattgatatcctattt |
4142985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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