View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1200_high_17 (Length: 321)

Name: NF1200_high_17
Description: NF1200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1200_high_17
NF1200_high_17
[»] chr2 (18 HSPs)
chr2 (26-157)||(24145209-24145332)
chr2 (107-269)||(41324895-41325057)
chr2 (138-283)||(13793661-13793806)
chr2 (221-291)||(24145138-24145208)
chr2 (142-270)||(9745348-9745476)
chr2 (100-177)||(14251181-14251259)
chr2 (101-155)||(9745341-9745395)
chr2 (132-186)||(28564293-28564347)
chr2 (224-270)||(41324896-41324942)
chr2 (109-170)||(20897338-20897399)
chr2 (109-154)||(41325012-41325057)
chr2 (130-186)||(4983966-4984022)
chr2 (133-173)||(8675560-8675600)
chr2 (102-186)||(8842425-8842509)
chr2 (124-211)||(39994453-39994541)
chr2 (132-186)||(38070085-38070140)
chr2 (201-270)||(14251183-14251251)
chr2 (224-269)||(22536990-22537035)
[»] chr1 (10 HSPs)
chr1 (100-269)||(17322077-17322245)
chr1 (200-282)||(36724236-36724318)
chr1 (109-186)||(30018657-30018734)
chr1 (109-173)||(31142435-31142498)
chr1 (103-214)||(7172446-7172557)
chr1 (124-209)||(7003151-7003236)
chr1 (108-173)||(8258904-8258969)
chr1 (109-183)||(49632906-49632982)
chr1 (103-174)||(12369454-12369526)
chr1 (133-185)||(39481477-39481529)
[»] chr4 (23 HSPs)
chr4 (114-264)||(53860786-53860935)
chr4 (101-176)||(3703571-3703648)
chr4 (103-217)||(34290800-34290914)
chr4 (103-259)||(43136827-43136985)
chr4 (132-270)||(3703578-3703716)
chr4 (101-175)||(12329005-12329080)
chr4 (201-264)||(5979790-5979853)
chr4 (132-219)||(32430545-32430632)
chr4 (132-270)||(12328936-12329073)
chr4 (133-186)||(44307841-44307894)
chr4 (134-178)||(54734351-54734395)
chr4 (103-269)||(4873048-4873213)
chr4 (100-146)||(54335419-54335465)
chr4 (109-154)||(2605472-2605517)
chr4 (103-156)||(34290731-34290784)
chr4 (114-177)||(53860786-53860850)
chr4 (129-176)||(5979757-5979804)
chr4 (114-176)||(25411580-25411642)
chr4 (113-154)||(5979813-5979854)
chr4 (114-155)||(54923065-54923106)
chr4 (119-180)||(43136827-43136890)
chr4 (133-177)||(48292359-48292403)
chr4 (196-236)||(48292383-48292423)
[»] chr7 (7 HSPs)
chr7 (119-269)||(37701250-37701401)
chr7 (116-173)||(26027212-26027268)
chr7 (124-219)||(5617893-5617988)
chr7 (104-154)||(37701245-37701295)
chr7 (101-158)||(36618093-36618150)
chr7 (103-155)||(40591605-40591657)
chr7 (128-173)||(48073030-48073077)
[»] chr6 (6 HSPs)
chr6 (133-184)||(22476128-22476179)
chr6 (133-176)||(18142381-18142424)
chr6 (202-264)||(30351445-30351507)
chr6 (201-264)||(16396656-16396719)
chr6 (114-172)||(12120107-12120165)
chr6 (133-173)||(1317663-1317703)
[»] chr5 (8 HSPs)
chr5 (109-184)||(8367025-8367099)
chr5 (193-264)||(35924657-35924727)
chr5 (101-219)||(12075924-12076042)
chr5 (107-236)||(5506879-5507008)
chr5 (107-264)||(6706273-6706429)
chr5 (124-270)||(4639425-4639575)
chr5 (124-263)||(14613550-14613690)
chr5 (124-199)||(5045145-5045220)
[»] chr8 (5 HSPs)
chr8 (201-259)||(25939302-25939360)
chr8 (124-213)||(34676984-34677074)
chr8 (114-175)||(34307052-34307113)
chr8 (102-147)||(41667870-41667915)
chr8 (109-173)||(9040938-9041001)
[»] chr3 (4 HSPs)
chr3 (101-218)||(21808879-21808997)
chr3 (101-154)||(26452918-26452971)
chr3 (159-189)||(26851253-26851283)
chr3 (124-173)||(29722745-29722793)
[»] scaffold0110 (2 HSPs)
scaffold0110 (117-258)||(11447-11587)
scaffold0110 (117-258)||(19184-19324)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 24145332 - 24145209
Alignment:
Q  26 tgattatgattgtgatgtaagatgtatatgttacctaaaataggcaaaaaatggaggttgataatatgatgagtaaattgttgttttaacatccattatt 125  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24145332 tgattatgattgtgatgtaagatgtatatgtt--------taggcaaaaaatggaggttgataatatgatgagtaaattgttgttttaacatccattatt 24145241  T
Q  126 tcttagaaacacatggaaatgaccaaaaaatc 157  Q
    ||||||||||||||||||||||||||||||||    
T  24145240 tcttagaaacacatggaaatgaccaaaaaatc 24145209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 107 - 269
Target Start/End: Original strand, 41324895 - 41325057
Alignment:
Q  107 tgttttaacatccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttctgctttaaagtcaatggtagt 206  Q
    |||||| ||||||||| |||||||||||||||| ||||| |||||||| || ||| ||||||||||||||||||||||||||||| |||||| || ||||    
T  41324895 tgttttgacatccattgtttcttagaaacacattgaaattaccaaaaagtccagcagtagttaactaccgccgattttctgctttgaagtcagtgatagt 41324994  T
Q  207 taactaccgctggtgtgtttttggtaatttccatatatttctaagaaacaatggatgtcaaaa 269  Q
    ||||||||  ||   |||||||||| |||||||| | ||||||||||||||||||||||||||    
T  41324995 taactaccattgaaatgtttttggttatttccatgtgtttctaagaaacaatggatgtcaaaa 41325057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 138 - 283
Target Start/End: Complemental strand, 13793806 - 13793661
Alignment:
Q  138 atggaaatgaccaaaaaatctagcggtagttaactaccgccgattttctgctttaaagtcaatggtagttaactaccgctggtgtgtttttggtaatttc 237  Q
    |||||||||||||||||| || || |||||||| ||| | |||||||||||||| ||| |||  |||||||||||||| ||| ||||||||||| |||      
T  13793806 atggaaatgaccaaaaaaactggcagtagttaattactgtcgattttctgctttgaagccaaccgtagttaactaccgttggggtgtttttggtcattct 13793707  T
Q  238 catatatttctaagaaacaatggatgtcaaaacggtaacactcata 283  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||||    
T  13793706 catatgtttctaagaaacaatggatgtcaaaacagcaacactcata 13793661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 24145208 - 24145138
Alignment:
Q  221 gtgtttttggtaatttccatatatttctaagaaacaatggatgtcaaaacggtaacactcatatgatgata 291  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24145208 gtgtttttgataatttccatatgtttctaagaaacaatggatgtcaaaacagtaacactcatatgatgata 24145138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 270
Target Start/End: Complemental strand, 9745476 - 9745348
Alignment:
Q  142 aaatgaccaaaaaatctagcggtagttaactaccgccgattttctgctttaaagtcaatggtagttaactaccgctggtgtgttttt-ggtaatttccat 240  Q
    ||||||||||||| || |||||||||||||||||||||||||||    |  ||||||   ||||||||||||||| || || ||||| ||| |||||||     
T  9745476 aaatgaccaaaaactc-agcggtagttaactaccgccgattttcctaatataagtcagcagtagttaactaccgccggagttttttttggtcatttccac 9745378  T
Q  241 atatttctaagaaacaatggatgtcaaaac 270  Q
    || |||||||||||||||||||||||||||    
T  9745377 atgtttctaagaaacaatggatgtcaaaac 9745348  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 14251259 - 14251181
Alignment:
Q  100 aaattgttgttttaacatccattatttcttagaaacacatggaaatgaccaaaaaat-ctagcggtagttaactaccgc 177  Q
    ||||||||||||| ||||  ||| ||||||||||| |||||||||||| |||||| | |||||||||||||||||||||    
T  14251259 aaattgttgttttgacatttattgtttcttagaaatacatggaaatgaacaaaaattcctagcggtagttaactaccgc 14251181  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 9745341 - 9745395
Alignment:
Q  101 aattgttgttttaacatccattatttcttagaaacacatggaaatgaccaaaaaa 155  Q
    ||||| |||||| ||||||||| |||||||||||||  |||||||||||||||||    
T  9745341 aattgctgttttgacatccattgtttcttagaaacatgtggaaatgaccaaaaaa 9745395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 28564293 - 28564347
Alignment:
Q  132 aaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttct 186  Q
    |||||||||||||||| ||||||| | ||||||| ||||||||| ||||||||||    
T  28564293 aaacacatggaaatgatcaaaaaacccagcggtaattaactacctccgattttct 28564347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 41324942 - 41324896
Alignment:
Q  224 tttttggtaatttccatatatttctaagaaacaatggatgtcaaaac 270  Q
    |||||||||||||| || | |||||||||||||||||||||||||||    
T  41324942 tttttggtaatttcaatgtgtttctaagaaacaatggatgtcaaaac 41324896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 20897338 - 20897399
Alignment:
Q  109 ttttaacatccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaa 170  Q
    |||| ||||||| |||||  ||||||||||||||||||| ||||||||| ||| ||||||||    
T  20897338 ttttgacatccaatattttctagaaacacatggaaatgatcaaaaaatccagcagtagttaa 20897399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 41325057 - 41325012
Alignment:
Q  109 ttttaacatccattatttcttagaaacacatggaaatgaccaaaaa 154  Q
    |||| ||||||||| |||||||||||||||||||||| ||||||||    
T  41325057 ttttgacatccattgtttcttagaaacacatggaaataaccaaaaa 41325012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 4983966 - 4984022
Alignment:
Q  130 agaaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttct 186  Q
    ||||||||||| |||||||  ||||||  |||||||||||||||||| |||||||||    
T  4983966 agaaacacatgtaaatgacttaaaaattcagcggtagttaactaccgtcgattttct 4984022  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 8675600 - 8675560
Alignment:
Q  133 aacacatggaaatgaccaaaaaatctagcggtagttaacta 173  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  8675600 aacacatggaaatgaccaaaaaaaccagcggtagttaacta 8675560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 8842509 - 8842425
Alignment:
Q  102 attgttgttttaacatccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttct 186  Q
    |||||| |||| || |||| | |||| |||||||||||||||||| | ||||||   |||||||||||||||||| || ||||||    
T  8842509 attgttttttttacttccaatgtttcctagaaacacatggaaatgtctaaaaaactcagcggtagttaactaccgtcggttttct 8842425  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 211
Target Start/End: Original strand, 39994453 - 39994541
Alignment:
Q  124 tttcttagaaacacatggaaatgaccaaaaaatc-tagcggtagttaactaccgccgattttctgctttaaagtcaatggtagttaact 211  Q
    |||| |||||||||||  |||||| ||||||| | |||||||||||||||||||  || |||||| ||  ||||||| |||||||||||    
T  39994453 tttcctagaaacacataaaaatgatcaaaaaaacgtagcggtagttaactaccgttgagtttctgtttataagtcaacggtagttaact 39994541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 38070140 - 38070085
Alignment:
Q  132 aaacacatggaaatgaccaaaaaatctagcggta-gttaactaccgccgattttct 186  Q
    ||||| ||||||||||| ||||||||||| |||| ||||||||||| |||||||||    
T  38070140 aaacagatggaaatgacaaaaaaatctagtggtatgttaactaccgtcgattttct 38070085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 14251183 - 14251251
Alignment:
Q  201 ggtagttaactaccgctggtgtgtttttggtaatttccatatatttctaagaaacaatggatgtcaaaac 270  Q
    ||||||||||||||||| | |  |||||| | |||||||| |||||||||||||||||  ||||||||||    
T  14251183 ggtagttaactaccgctag-gaatttttgttcatttccatgtatttctaagaaacaataaatgtcaaaac 14251251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 22536990 - 22537035
Alignment:
Q  224 tttttggtaatttccatatatttctaagaaacaatggatgtcaaaa 269  Q
    |||||||| |||||||| |||||||| ||||| |||||||||||||    
T  22536990 tttttggtcatttccatgtatttctaggaaacgatggatgtcaaaa 22537035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 100 - 269
Target Start/End: Original strand, 17322077 - 17322245
Alignment:
Q  100 aaattgttgttttaacatccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttctgctttaaagtcaa 199  Q
    |||||| |||||| ||||  ||| ||||||||||||| |||||||||| |||||||   || |||||||||||||||| | ||||||||||||||| |||    
T  17322077 aaattgctgttttgacatatattgtttcttagaaacaaatggaaatgatcaaaaaactcagtggtagttaactaccgctggttttctgctttaaagccaa 17322176  T
Q  200 tggtagttaactaccgctggtgtgtttttggtaatttccatatatttctaagaaacaatggatgtcaaaa 269  Q
       ||||||| |||||||| ||| ||||| || ||||| || | ||||||||||||||||| ||||||||    
T  17322177 caatagttaattaccgctgatgtattttttgttatttctatgtgtttctaagaaacaatgg-tgtcaaaa 17322245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 282
Target Start/End: Original strand, 36724236 - 36724318
Alignment:
Q  200 tggtagttaactaccgctggtgtgtttttggtaatttccatatatttctaagaaacaatggatgtcaaaacggtaacactcat 282  Q
    |||||||||||||||| |||  | |||||||| ||||||||||||||||| ||| |||||||||| ||||| | |||||||||    
T  36724236 tggtagttaactaccgttgggttttttttggttatttccatatatttctaggaagcaatggatgtgaaaacagcaacactcat 36724318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 30018734 - 30018657
Alignment:
Q  109 ttttaacatccattatttcttagaaa-cacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttct 186  Q
    |||| ||||||||| |||| |||||| ||||||||||||||||||||  | | ||||||||||||||||||||||||||    
T  30018734 ttttgacatccattgtttcctagaaaacacatggaaatgaccaaaaacccaa-cggtagttaactaccgccgattttct 30018657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 31142435 - 31142498
Alignment:
Q  109 ttttaacatccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaacta 173  Q
    |||| |||||||||||||| ||||||||||||||||| | |||||| || |||||||||||||||    
T  31142435 ttttgacatccattatttcatagaaacacatggaaataatcaaaaactc-agcggtagttaacta 31142498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 7172557 - 7172446
Alignment:
Q  103 ttgttgttttaacatccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttctgctttaaagtcaatgg 202  Q
    |||||||| | ||||||||| ||||||||| |||   | ||||||||||||||   ||||||||||||||||  ||||||||||  ||| ||||||  |     
T  7172557 ttgttgttcttacatccattgtttcttagagacattagtaaatgaccaaaaaactcagcggtagttaactactaccgattttctattttgaagtcagcgc 7172458  T
Q  203 tagttaactacc 214  Q
    ||||||||||||    
T  7172457 tagttaactacc 7172446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 7003236 - 7003151
Alignment:
Q  124 tttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttctgctttaaagtcaatggtagttaa 209  Q
    |||| |||||||||||| ||||||||||||||  ||||||||||||| || |  || ||||||| ||  ||||||| |||||||||    
T  7003236 tttcctagaaacacatgaaaatgaccaaaaaacttagcggtagttaattatcaacggttttctgtttataagtcaacggtagttaa 7003151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 8258904 - 8258969
Alignment:
Q  108 gttttaacatccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaacta 173  Q
    ||||| ||||||||| |||| || ||||||||| ||||||| ||||||   |||||||||||||||    
T  8258904 gttttcacatccattgtttcctaaaaacacatgaaaatgactaaaaaactcagcggtagttaacta 8258969  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 49632982 - 49632906
Alignment:
Q  109 ttttaacatccatt-atttcttagaaacacatggaaatgaccaaaaa-at-ctagcggtagttaactaccgccgattt 183  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| || || | |||||||||||||||| |||||    
T  49632982 ttttgacatccattgatttct-agaaacacatggaaatgaccaaaaacatcctcgtggtagttaactaccgctgattt 49632906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 12369454 - 12369526
Alignment:
Q  103 ttgttgttttaacatccattatttcttagaaacacatggaaatgaccaaaaaat-ctagcggtagttaactac 174  Q
    |||||||| | ||||||||| ||| ||| |||||| || |||||||||||| || | ||||||||||||||||    
T  12369454 ttgttgttcttacatccattgttttttaaaaacacgtgaaaatgaccaaaagatcccagcggtagttaactac 12369526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 39481529 - 39481477
Alignment:
Q  133 aacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttc 185  Q
    |||| |||||||||||||||||||  ||| ||| ||||||||||||| |||||    
T  39481529 aacatatggaaatgaccaaaaaattcagcagtaattaactaccgccggttttc 39481477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 264
Target Start/End: Complemental strand, 53860935 - 53860786
Alignment:
Q  114 acatccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttctgctttaaagtcaatggtagttaactac 213  Q
    ||||||||| |||| ||||||||||||||||||||||||||||  || |||||||||| ||||| ||||||||  ||  ||||||  ||| |||||||||    
T  53860935 acatccattgtttcctagaaacacatggaaatgaccaaaaaattcagtggtagttaaccaccgctgattttctagttataagtcagcggtggttaactac 53860836  T
Q  214 cgctggtgtgtttttggtaatttccatatatttctaagaaacaatggatgt 264  Q
    || |||  | |||||||| |||||||| | |||||| |||||| |||||||    
T  53860835 cgttgg-atttttttggtcatttccatgtgtttctaggaaacattggatgt 53860786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 3703571 - 3703648
Alignment:
Q  101 aattgttgttttaacatccattatttcttagaaacacatggaaatgaccaaaaaatc--tagcggtagttaactaccg 176  Q
    |||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||   ||||||||||||||||||    
T  3703571 aattgttgttttaacatccattgttttttagaaacacatgaaaatgaccaaaaaatcatcagcggtagttaactaccg 3703648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 217
Target Start/End: Complemental strand, 34290914 - 34290800
Alignment:
Q  103 ttgttgttttaacatccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttctgctttaaagtcaatgg 202  Q
    |||||||| | ||||| ||| ||||||| ||||| |||||||||||| ||||||  || ||||||||||||||| || ||||||| ||| |||||| ||     
T  34290914 ttgttgttcttacatctattgtttcttaaaaacatatggaaatgacccaaaaattaagtggtagttaactaccgtcggttttctgttttgaagtcagtga 34290815  T
Q  203 tagttaactaccgct 217  Q
    |||||||||||||||    
T  34290814 tagttaactaccgct 34290800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 259
Target Start/End: Complemental strand, 43136985 - 43136827
Alignment:
Q  103 ttgttgttttaacatccattatttcttagaaacacatggaaatgaccaa--aaaatctagcggtagttaactaccgccgattttctgctttaaagtcaat 200  Q
    |||||||||| |||| ||||||||| |||||| ||||| ||||||||||  |||||| | | ||||||||||||||||| |||||| |||  |||||       
T  43136985 ttgttgttttcacatacattatttcctagaaatacatgaaaatgaccaaagaaaatccaactgtagttaactaccgccgtttttctacttataagtcggc 43136886  T
Q  201 ggtagttaactaccgctggtgtgtttttggtaatttccatatatttctaagaaacaatg 259  Q
    | ||||||||||||||  | || ||||| || |||||||| | ||| ||||||||||||    
T  43136885 gatagttaactaccgccagagtatttttagtcatttccatgtgtttttaagaaacaatg 43136827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 132 - 270
Target Start/End: Complemental strand, 3703716 - 3703578
Alignment:
Q  132 aaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttctgctttaaagtcaatggtagttaactaccgctggtgtgtttttggt 231  Q
    |||||||||||||||||||||||  | |||||||||||| || || || |||  |  ||  ||||||| |||||||||||||||||| ||  ||||||||    
T  3703716 aaacacatggaaatgaccaaaaaccccagcggtagttaattatcgtcggtttctttgttataagtcaacggtagttaactaccgctgatgattttttggt 3703617  T
Q  232 aatttccatatatttctaagaaacaatggatgtcaaaac 270  Q
     |||| ||| | ||||||| ||||||||||||| |||||    
T  3703616 cattttcatgtgtttctaaaaaacaatggatgttaaaac 3703578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 12329080 - 12329005
Alignment:
Q  101 aattgttgttttaacatccattatttcttagaaacacatggaaatgaccaaaaaat-ctagcggtagttaactacc 175  Q
    |||||||||||| ||||||||| ||| ||||||||||||| |||||| |||||| | |||||||||||||||||||    
T  12329080 aattgttgttttgacatccattgttttttagaaacacatgaaaatgatcaaaaactcctagcggtagttaactacc 12329005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 5979790 - 5979853
Alignment:
Q  201 ggtagttaactaccgctggtgtgtttttggtaatttccatatatttctaagaaacaatggatgt 264  Q
    ||||||||||||||| ||| ||||||||||| |||||||| | |||||||||||||||| ||||    
T  5979790 ggtagttaactaccgttggggtgtttttggtcatttccatttgtttctaagaaacaatgaatgt 5979853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 32430632 - 32430545
Alignment:
Q  132 aaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttctgctttaaagtcaatggtagttaactaccgctgg 219  Q
    ||||||||| ||| ||| ||||| |  ||||||||||||||||||||||||||||  ||  |||||  ||||||||||||||||||||    
T  32430632 aaacacatgaaaaagactaaaaagttcagcggtagttaactaccgccgattttctagttataagtctgtggtagttaactaccgctgg 32430545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 270
Target Start/End: Original strand, 12328936 - 12329073
Alignment:
Q  132 aaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttctgctttaaagtcaatggtagttaactaccgctggtgtgtttttggt 231  Q
    ||||||||| |||| | |||||||   | ||||||||||||| | ||| ||||||| ||  || ||| |||||||||||||||||| | | ||||||| |    
T  12328936 aaacacatgaaaattatcaaaaaaatcaacggtagttaactatcaccggttttctgtttataattcagtggtagttaactaccgctag-gagtttttgat 12329034  T
Q  232 aatttccatatatttctaagaaacaatggatgtcaaaac 270  Q
     |||| ||| | ||||||| |||||||||||||||||||    
T  12329035 cattttcatgtgtttctaaaaaacaatggatgtcaaaac 12329073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 44307841 - 44307894
Alignment:
Q  133 aacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttct 186  Q
    ||||||||||||||||||||||||  | ||||||||||||||||||| ||||||    
T  44307841 aacacatggaaatgaccaaaaaattcaacggtagttaactaccgccggttttct 44307894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 54734351 - 54734395
Alignment:
Q  134 acacatggaaatgaccaaaaaatctagcggtagttaactaccgcc 178  Q
    |||||||||||||||||||||||| || |||||||||||||||||    
T  54734351 acacatggaaatgaccaaaaaatcgagtggtagttaactaccgcc 54734395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 269
Target Start/End: Complemental strand, 4873213 - 4873048
Alignment:
Q  103 ttgttgttttaacatccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttctgctttaaagtcaatgg 202  Q
    ||||| |||| ||||||||| |||| || ||||||||| ||||||| |||||  | || ||||||||||||||  |  ||||||  ||  ||||||  ||    
T  4873213 ttgtttttttgacatccattctttcctaaaaacacatgaaaatgactaaaaaccc-agtggtagttaactaccatcagttttctagttataagtcagcgg 4873115  T
Q  203 tagttaactaccgctggtgtgtttttggtaatttccatatatttctaagaaacaatggatgtcaaaa 269  Q
    ||||||||||||||||  ||||||||| | |||||||| | ||| ||  ||| |||||| |||||||    
T  4873114 tagttaactaccgctgaagtgtttttgatcatttccatgtgtttttagaaaataatggaagtcaaaa 4873048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 54335419 - 54335465
Alignment:
Q  100 aaattgttgttttaacatccattatttcttagaaacacatggaaatg 146  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||||    
T  54335419 aaattgttgttctcacatccattgtttcttagaaacacatggaaatg 54335465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 2605517 - 2605472
Alignment:
Q  109 ttttaacatccattatttcttagaaacacatggaaatgaccaaaaa 154  Q
    |||| |||||||||||||| ||||||||||||||||||| ||||||    
T  2605517 ttttgacatccattatttcctagaaacacatggaaatgatcaaaaa 2605472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 34290731 - 34290784
Alignment:
Q  103 ttgttgttttaacatccattatttcttagaaacacatggaaatgaccaaaaaat 156  Q
    |||||||| | ||||||||| ||||||||||||||||||||||||  |||||||    
T  34290731 ttgttgttctcacatccattgtttcttagaaacacatggaaatgataaaaaaat 34290784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 53860786 - 53860850
Alignment:
Q  114 acatccattatttcttagaaacacatggaaatgacc-aaaaaatctagcggtagttaactaccgc 177  Q
    ||||||| | |||| ||||||||||||||||||||| |||||||| | ||||||||||| |||||    
T  53860786 acatccaatgtttcctagaaacacatggaaatgaccaaaaaaatccaacggtagttaaccaccgc 53860850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 5979757 - 5979804
Alignment:
Q  129 tagaaacacatggaaatgaccaaaaaatctagcggtagttaactaccg 176  Q
    |||||||||||||||||||| ||||||   ||||||||||||||||||    
T  5979757 tagaaacacatggaaatgactaaaaaactcagcggtagttaactaccg 5979804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 25411580 - 25411642
Alignment:
Q  114 acatccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaactaccg 176  Q
    ||||||| || ||| |||||||||||| | ||||| |||||| ||| ||||||||||||||||    
T  25411580 acatccaatagttcctagaaacacatgtacatgactaaaaaaactaacggtagttaactaccg 25411642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 5979854 - 5979813
Alignment:
Q  113 aacatccattatttcttagaaacacatggaaatgaccaaaaa 154  Q
    ||||| |||| ||||||||||||| |||||||||||||||||    
T  5979854 aacattcattgtttcttagaaacaaatggaaatgaccaaaaa 5979813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 54923106 - 54923065
Alignment:
Q  114 acatccattatttcttagaaacacatggaaatgaccaaaaaa 155  Q
    ||||||||| |||| |||| ||||||||||||||||||||||    
T  54923106 acatccattgtttcctagagacacatggaaatgaccaaaaaa 54923065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 43136827 - 43136890
Alignment:
Q  119 cattatttcttagaaacacatggaaatgaccaaaa--aatctagcggtagttaactaccgccga 180  Q
    |||| ||||||| ||||||||||||||||| ||||  | ||| |||||||||||||| ||||||    
T  43136827 cattgtttcttaaaaacacatggaaatgactaaaaatactctggcggtagttaactatcgccga 43136890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 48292359 - 48292403
Alignment:
Q  133 aacacatggaaatgaccaaaaaatctagcggtagttaactaccgc 177  Q
    |||||||||||||||||||||||   | |||||||||||||||||    
T  48292359 aacacatggaaatgaccaaaaaactcaacggtagttaactaccgc 48292403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 48292383 - 48292423
Alignment:
Q  196 tcaatggtagttaactaccgctggtgtgtttttggtaattt 236  Q
    |||| ||||||||||||||||||| ||||||||||| ||||    
T  48292383 tcaacggtagttaactaccgctggagtgtttttggtcattt 48292423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 269
Target Start/End: Complemental strand, 37701401 - 37701250
Alignment:
Q  119 cattatttcttagaaacacatggaaatgaccaaaaaatct-agcggtagttaactaccgccgattttctgctttaaagtcaatggtagttaactaccgct 217  Q
    |||| ||||||| ||| |||||||||| | |||||||  | | |||||||||||||||| ||||||| |  ||  ||||||  |||||||||||||  |     
T  37701401 cattgtttcttaaaaatacatggaaattatcaaaaaaattcaacggtagttaactaccgtcgattttttagttataagtcagcggtagttaactacaacc 37701302  T
Q  218 ggtgtgtttttggtaatttccatatatttctaagaaacaatggatgtcaaaa 269  Q
    |  ||||||||| | |||||||||| ||||||||||||||||||||||||||    
T  37701301 gaagtgtttttgatcatttccatatgtttctaagaaacaatggatgtcaaaa 37701250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 26027212 - 26027268
Alignment:
Q  116 atccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaacta 173  Q
    |||||||||||  ||||||||||||||||||||| |||||| |||||||| |||||||    
T  26027212 atccattattttctagaaacacatggaaatgacc-aaaaatatagcggtaattaacta 26027268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 5617988 - 5617893
Alignment:
Q  124 tttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttctgctttaaagtcaatggtagttaactaccgctgg 219  Q
    |||| |||||||||||| ||| ||| |||||  | |||||||||||| |||||||| ||||||  ||  ||| ||  |||||||||||||||||||    
T  5617988 tttcctagaaacacatgaaaaagactaaaaagcccagcggtagttaattaccgccggttttctagttataagccagcggtagttaactaccgctgg 5617893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 37701245 - 37701295
Alignment:
Q  104 tgttgttttaacatccattatttcttagaaacacatggaaatgaccaaaaa 154  Q
    |||| |||| ||||||||| ||||||||||||| |||||||||| ||||||    
T  37701245 tgtttttttgacatccattgtttcttagaaacatatggaaatgatcaaaaa 37701295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 36618093 - 36618150
Alignment:
Q  101 aattgttgttttaacatccattatttcttagaaacacatggaaatgaccaaaaaatct 158  Q
    |||||||||||| |||| |||| ||||||| |||||| ||||||| | ||||||||||    
T  36618093 aattgttgttttgacattcattgtttcttaaaaacacttggaaattatcaaaaaatct 36618150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 40591657 - 40591605
Alignment:
Q  103 ttgttgttttaacatccattatttcttagaaacacatggaaatgaccaaaaaa 155  Q
    |||||||| | ||||||||  ||| ||||||||||||| ||||||||||||||    
T  40591657 ttgttgttcttacatccatagtttattagaaacacatgaaaatgaccaaaaaa 40591605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 48073030 - 48073077
Alignment:
Q  128 ttagaaacacatggaaatgaccaaaa--aatctagcggtagttaacta 173  Q
    ||||||||||||||||||||||||||  | ||||||| ||||||||||    
T  48073030 ttagaaacacatggaaatgaccaaaaatactctagcgatagttaacta 48073077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 22476179 - 22476128
Alignment:
Q  133 aacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgatttt 184  Q
    ||||||||||||||||||||||||  |||||||||||||||||| |||||||    
T  22476179 aacacatggaaatgaccaaaaaattcagcggtagttaactaccgtcgatttt 22476128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 18142381 - 18142424
Alignment:
Q  133 aacacatggaaatgaccaaaaaatctagcggtagttaactaccg 176  Q
    |||||||| |||||||||||||||| ||||||||||||||||||    
T  18142381 aacacatgaaaatgaccaaaaaatcaagcggtagttaactaccg 18142424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 30351507 - 30351445
Alignment:
Q  202 gtagttaactaccgctggtgtgtttttggtaatttccatatatttctaagaaacaatggatgt 264  Q
    |||||||||||||| ||| ||||||||||| |||| ||||| |||||| |||||||| |||||    
T  30351507 gtagttaactaccgttggggtgtttttggtcattttcatatgtttctaggaaacaatagatgt 30351445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 16396656 - 16396719
Alignment:
Q  201 ggtagttaactaccgctggtgtgtttttggtaatttccatatatttctaagaaacaatggatgt 264  Q
    ||||||||||||||| ||| |||||||| || |||| ||  ||||||||| |||||||||||||    
T  16396656 ggtagttaactaccgttggggtgtttttagtcattttcacgtatttctaaaaaacaatggatgt 16396719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 12120107 - 12120165
Alignment:
Q  114 acatccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaact 172  Q
    ||||||| ||| |||| |||||||| | ||||||| |||||| ||||||||||||||||    
T  12120107 acatccaatatgtcttggaaacacaagcaaatgactaaaaaacctagcggtagttaact 12120165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 1317703 - 1317663
Alignment:
Q  133 aacacatggaaatgaccaaaaaatctagcggtagttaacta 173  Q
    |||| |||||||||||||||||||  |||||||||||||||    
T  1317703 aacaaatggaaatgaccaaaaaattcagcggtagttaacta 1317663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 8367025 - 8367099
Alignment:
Q  109 ttttaacatccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgatttt 184  Q
    |||| ||||||||| |||| ||||||| ||| |||||||||||||| || ||||||||||||||||| ||||||||    
T  8367025 ttttgacatccattgtttcctagaaacccatagaaatgaccaaaaactc-agcggtagttaactaccaccgatttt 8367099  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 264
Target Start/End: Original strand, 35924657 - 35924727
Alignment:
Q  193 aagtcaatggtagttaactaccgctggtgtgtttttggtaatttccatatatttctaagaaacaatggatgt 264  Q
    |||||||||||||||||||| ||||||  ||| |||||| |||||||||| |||||| ||||||||||||||    
T  35924657 aagtcaatggtagttaactatcgctgga-tgtgtttggttatttccatatgtttctaggaaacaatggatgt 35924727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 219
Target Start/End: Complemental strand, 12076042 - 12075924
Alignment:
Q  101 aattgttgttttaacatccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttctgctttaaagtcaat 200  Q
    ||||| |||| |||||| || | | ||||||||||||| | |||||||||||||| | ||||| |||||||| | |||| ||||||  ||  ||||||      
T  12076042 aattgatgttctaacattcaatgtgtcttagaaacacaagtaaatgaccaaaaaaccaagcggcagttaactgctgccggttttctagttataagtcagc 12075943  T
Q  201 ggtagttaactaccgctgg 219  Q
    |||||||||||||||||||    
T  12075942 ggtagttaactaccgctgg 12075924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 236
Target Start/End: Complemental strand, 5507008 - 5506879
Alignment:
Q  107 tgttttaacatccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttctgctttaaagtcaatggtagt 206  Q
    |||||| ||||||||| ||| |||||||||| || ||||||  |||||||  || |||| ||||||||||||||||||||  ||  ||| || | | |||    
T  5507008 tgttttcacatccattgttttttagaaacacgtgaaaatgattaaaaaattcagtggtaattaactaccgccgattttctagttataagccagtcgcagt 5506909  T
Q  207 taactaccgctggtgtgtttttggtaattt 236  Q
    ||||||||||||   |||||||||| ||||    
T  5506908 taactaccgctgagatgtttttggttattt 5506879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 264
Target Start/End: Complemental strand, 6706429 - 6706273
Alignment:
Q  107 tgttttaacatccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttctgctttaaagtcaatggtagt 206  Q
    |||||| ||||| | | ||||||| |||||||   ||||||| ||||| || | |||||||||||||| ||| ||||| |  ||  ||||||| ||||||    
T  6706429 tgtttttacatctagtgtttcttaaaaacacacaaaaatgacaaaaaactcaa-cggtagttaactactgccaattttttagttataagtcaacggtagt 6706331  T
Q  207 taactaccgctggtgtgtttttggtaatttccatatatttctaagaaacaatggatgt 264  Q
    ||||||||||||   |||||||||| |||| ||| | ||| |||||||||||| ||||    
T  6706330 taactaccgctgaaatgtttttggttattttcatgtgtttataagaaacaatgaatgt 6706273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 270
Target Start/End: Original strand, 4639425 - 4639575
Alignment:
Q  124 tttcttagaaacacatggaaatgaccaaaaaatcta-gcggtagttaactaccgccgattttctgctttaaagtcaatggtagttaactaccgc---tgg 219  Q
    ||||||||||||||||| ||||||  |||||| ||  ||||||||||| ||||  || || | |||||| ||||||| ||||||| ||||| ||   |||    
T  4639425 tttcttagaaacacatgaaaatgataaaaaaaactccgcggtagttaaataccatcggttgtatgctttgaagtcaacggtagttgactactgccactgg 4639524  T
Q  220 tgtgtttttggtaatttccatatatttctaagaaacaatggatgtcaaaac 270  Q
     ||||||||| | |||| ||| | |||||||||||||||| | ||||||||    
T  4639525 ggtgtttttgatcattttcatgtgtttctaagaaacaatgaaggtcaaaac 4639575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 263
Target Start/End: Complemental strand, 14613690 - 14613550
Alignment:
Q  124 tttcttagaaacacatggaaatgaccaaaaaat--ctagcggtagttaactaccgccgattttctgctttaaagtcaatggtagttaactaccgctggtg 221  Q
    |||| |||||| |||||| |||| |||||||||  | |||| |||||||||||||||||||||||  ||  ||| ||   || | ||||||||| ||| |    
T  14613690 tttcctagaaatacatgggaatg-ccaaaaaataaccagcgttagttaactaccgccgattttctagttataagccagcagtggctaactaccgttggag 14613592  T
Q  222 tgtttttggtaatttccatatatttctaagaaacaatggatg 263  Q
    |||||||||| |||| ||| | |||||| |||||||||||||    
T  14613591 tgtttttggttattttcatgtgtttctaggaaacaatggatg 14613550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 5045145 - 5045220
Alignment:
Q  124 tttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttctgctttaaagtcaa 199  Q
    ||||||||| | |||| |||||||| ||||| | ||||||||||||||||||  | |||||||| ||| |||||||    
T  5045145 tttcttagagatacatagaaatgactaaaaattttagcggtagttaactaccatcaattttctgttttgaagtcaa 5045220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 25939360 - 25939302
Alignment:
Q  201 ggtagttaactaccgctggtgtgtttttggtaatttccatatatttctaagaaacaatg 259  Q
    ||||||||||||||||| |||||||||||||  ||||||||| |||||| |||||||||    
T  25939360 ggtagttaactaccgcttgtgtgtttttggtcttttccatatgtttctaggaaacaatg 25939302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 213
Target Start/End: Complemental strand, 34677074 - 34676984
Alignment:
Q  124 tttcttagaaacacatggaaatgaccaaaaaatcta-gcggtagttaactaccgccgattttctgctttaaagtcaatggtagttaactac 213  Q
    |||| |||||||||||||||||||  |||||| ||| ||||||||||| |||||||||||||||  ||  ||| ||| |||||||||||||    
T  34677074 tttcctagaaacacatggaaatgataaaaaaaactaagcggtagttaaataccgccgattttctagttataagccaacggtagttaactac 34676984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 34307113 - 34307052
Alignment:
Q  114 acatccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaactacc 175  Q
    |||| |||||||||||||||| |||||||||||||||||||||| |||   |||||||||||    
T  34307113 acattcattatttcttagaaatacatggaaatgaccaaaaaatccagcaacagttaactacc 34307052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 41667870 - 41667915
Alignment:
Q  102 attgttgttttaacatccattatttcttagaaacacatggaaatga 147  Q
    ||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  41667870 attgttgttttaacatctattgtttcttagaaacacatgaaaatga 41667915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 9041001 - 9040938
Alignment:
Q  109 ttttaacatccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaacta 173  Q
    |||| |||| |||| |||| |||||||||||||||||||| ||||| || |||||||||||||||    
T  9041001 ttttgacattcattgtttcctagaaacacatggaaatgactaaaaactc-agcggtagttaacta 9040938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 218
Target Start/End: Original strand, 21808879 - 21808997
Alignment:
Q  101 aattgttgttttaacatccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttct-gctttaaagtcaa 199  Q
    |||| ||||||| |||| ||  || ||||||||||||| | |||||||||||||| ||||||  |||||||| | |||| |||||| ||| | ||| ||     
T  21808879 aattattgttttgacattcaacatgtcttagaaacacaagtaaatgaccaaaaaacctagcgtcagttaactgctgccggttttctagctatcaagccag 21808978  T
Q  200 tggtagttaactaccgctg 218  Q
     ||||||||||||||||||    
T  21808979 cggtagttaactaccgctg 21808997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 26452971 - 26452918
Alignment:
Q  101 aattgttgttttaacatccattatttcttagaaacacatggaaatgaccaaaaa 154  Q
    ||||||| |||  |||||||||||||| |||||||||||| |||||||||||||    
T  26452971 aattgttttttggacatccattatttcctagaaacacatgaaaatgaccaaaaa 26452918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 189
Target Start/End: Complemental strand, 26851283 - 26851253
Alignment:
Q  159 agcggtagttaactaccgccgattttctgct 189  Q
    |||||||||||||||||||||||||||||||    
T  26851283 agcggtagttaactaccgccgattttctgct 26851253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 29722745 - 29722793
Alignment:
Q  124 tttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaacta 173  Q
    |||| |||||||||||||||||||  |||||||||| |||||||||||||    
T  29722745 tttcctagaaacacatggaaatga-taaaaaatctaacggtagttaacta 29722793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 258
Target Start/End: Complemental strand, 11587 - 11447
Alignment:
Q  117 tccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttctgctttaaagtcaatggtagttaactaccgc 216  Q
    |||||| ||||||| ||| | ||| ||||||||||||| | || |  ||||||||||||| || ||||||  ||  |||||    |||||||||||| ||    
T  11587 tccattgtttcttaaaaatatatgaaaatgaccaaaaact-taacaatagttaactaccgtcggttttctagttataagtcggcagtagttaactacagc 11489  T
Q  217 tggtgtgtttttggtaatttccatatatttctaagaaacaat 258  Q
    |||  |||||||||| |||| ||||| |||||| ||||||||    
T  11488 tggaatgtttttggtcattttcatatgtttctaggaaacaat 11447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 258
Target Start/End: Complemental strand, 19324 - 19184
Alignment:
Q  117 tccattatttcttagaaacacatggaaatgaccaaaaaatctagcggtagttaactaccgccgattttctgctttaaagtcaatggtagttaactaccgc 216  Q
    |||||| ||||||| ||| | ||| ||||||||||||| | || |  ||||||||||||| || ||||||  ||  |||||    |||||||||||| ||    
T  19324 tccattgtttcttaaaaatatatgaaaatgaccaaaaact-taacaatagttaactaccgtcggttttctagttataagtcggcagtagttaactacagc 19226  T
Q  217 tggtgtgtttttggtaatttccatatatttctaagaaacaat 258  Q
    |||  |||||||||| |||| ||||| |||||| ||||||||    
T  19225 tggaatgtttttggtcattttcatatgtttctaggaaacaat 19184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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