View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1200_high_2 (Length: 671)
Name: NF1200_high_2
Description: NF1200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1200_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 97 - 661
Target Start/End: Original strand, 45189100 - 45189660
Alignment:
| Q |
97 |
ctgttgcattacattttatttgcatttgcatcaccttaatttgtcaagattgtaaagtacaaaatattgttacaaagccaattccggttatttcttacgc |
196 |
Q |
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| T |
45189100 |
ctgttacattacattttatttgcatttgcatcaccttaatttgtcaagattctaaagtacaaaatattgttaccaagccaattccggttatttcttacgc |
45189199 |
T |
|
| Q |
197 |
ggtttgcacctgttcctctggacaaacatacatacatagtaacattgtaaggtgtaacgcatatatagttctaatt-aattaatcattcagtttttacca |
295 |
Q |
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| T |
45189200 |
ggtttgcacctgttcctctggacaaacatacatacatagtaacattgtaaggtgtaacgcatatatagttctaattaaattaatcattcagtttttacca |
45189299 |
T |
|
| Q |
296 |
attctctctgtatctcatctcttacattgcattgcatgtctccatcttcacataatggaagaagaagagaataaagaggttcatatgaaaccttcattta |
395 |
Q |
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| T |
45189300 |
attctctctgtatctcatctctta-----cattgcatgtctccatcttcacataatggaagaagaagagaataaagaggttcatatgaaaccttcattta |
45189394 |
T |
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| Q |
396 |
atttcttctccattttcattcttatgannnnnnnatttacaccctccaattctgattctaccaccattgatcattctttatcaccttatgtcaattatct |
495 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45189395 |
atttcttctccattttcattcttataatttttttatttacaccctccaattctgattctaccaccattgatcattctttatcaccttatgtcaattacct |
45189494 |
T |
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| Q |
496 |
tattgattgtggctcttccaccaaaactcaactaatagatggtagaatcttcaaatctgatcgagaaaccacttcttttctttcaacaaccgaagatatt |
595 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45189495 |
tattgattgtggctcttccaccaaaactcaactaatagatggtagaatcttcaaatctgatcgagaaaccacttcttttctttcaacaaccgaagatatt |
45189594 |
T |
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| Q |
596 |
caagtttcagttgatttcattaacataaacctccctccttcattgccgccttcatcattgcctttg |
661 |
Q |
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| T |
45189595 |
caagtttcagttgatttcattaacataaacctccctccttcattgccgccttcatcattgcctttg |
45189660 |
T |
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