View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1200_high_20 (Length: 290)
Name: NF1200_high_20
Description: NF1200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1200_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 5298023 - 5298278
Alignment:
| Q |
1 |
ccaattatgacggatgaatgcaatttgcggtgacggtgcggtgctccgacacggtagcagtgcggtcctcatggtgaaacgaagtgtgtcttcaggcacg |
100 |
Q |
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| T |
5298023 |
ccaataatgacggatgaatgcaat----ggtgacggtgcggtgctccggcacggtagcggtgcggtcctcatgatgaa-cgaagtgtgtcttcagacacg |
5298117 |
T |
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| Q |
101 |
ttaacacttcaacgttcaaatcagcgtagaaaatgaggttgaatactaaaacaagtctcaatacaaatactcaaaagcatagtcaaactaatcacgttga |
200 |
Q |
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| T |
5298118 |
ttaacacttcaacgttcaaatcagcatagaaaatgaggttgaatactaaaacaagtctcaatacaaatagtcaaaagcatagtcaaactaatcacgttaa |
5298217 |
T |
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| Q |
201 |
gcacaacatgaaaatacataaaactcaaaccaaagatgtcaaacatgtaatagaatgtatc |
261 |
Q |
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| T |
5298218 |
gcacagcatgaaaatacataaaactcaaaccaaagatgtcaaacatgtagtagaatgtatc |
5298278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 17560702 - 17560816
Alignment:
| Q |
30 |
gtgacggtgcggtgctccgacacggtagcagtgcggtcctcatggtgaaacgaagtgtgtcttcaggcacgttaacacttcaacgttcaaatcagcgtag |
129 |
Q |
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| T |
17560702 |
gtgacggtgtcgtgctccggcacagtggctgtgttgtcctcacggtgaaatgaagggtgtctgcaggcacgttagcagcccaacgctcaagtcagtgtag |
17560801 |
T |
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| Q |
130 |
aaaatgaggttgaat |
144 |
Q |
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| T |
17560802 |
gaaatgaggttgaat |
17560816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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