View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1200_high_23 (Length: 269)
Name: NF1200_high_23
Description: NF1200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1200_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 5297759 - 5298010
Alignment:
| Q |
10 |
aacaatatgtgcattccattttggcatgtttaccatctaacattttactgca-------------tggtaatctatagtttgattttgacaatttaccta |
96 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5297759 |
aacaaaatgtgcattccattttggcatgtttaccatctaacattttactgcatgcatatgatgcatggtaatctatagtttgattttgacaatttaccta |
5297858 |
T |
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| Q |
97 |
tcatagtaatttttatattatatctgttccaaaccgatcctcattgtttacttgttatgagaatttcactgttaaccctaatctaatcccnnnnnnngtt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5297859 |
tcatagtaatttttatattatatctgttccaaaccgatcctcattgtttacttgttatgagaatttcactgttaaccctaatctaatcccaaaaaaagtt |
5297958 |
T |
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| Q |
197 |
tggcaattggaaaataaattagtgtgtttgattctatcgtgacaaatattaa |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5297959 |
tggcaattggaaaataaattagtgtgtttgattctatcgtgacaaatattaa |
5298010 |
T |
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