View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1200_high_3 (Length: 590)
Name: NF1200_high_3
Description: NF1200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1200_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 42443069 - 42442557
Alignment:
| Q |
1 |
catcgatatcctcaatttcaaccccgataccctctcactcaaacctcaaccttcactctccttcgatcacccttacccaccaaccaaactcatgttccat |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42443069 |
catcgatattctcaatttcaaccccgataccctctcactcaaacctcaaccttcactctccttcgatcacccttacccaccaaccaaactcatgttccat |
42442970 |
T |
|
| Q |
101 |
cccgccacacattcttctctccagaaaacctcctccgacctccttgctacctccggtgactatctccgtctctgggaagttcgtgaaaattccgttgaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42442969 |
cccgccacacattcttctctccagaaaacctcctccgacctccttgctacctccggtgactatctccgtctctgggaagttcgtgaaaattccgttgaag |
42442870 |
T |
|
| Q |
201 |
ctctttctcttttcaacaatagcaaaaccagtgagttttgtgctcctttaacatcatttgattggaatgaaattgagcccaaacgaattggaacttcaag |
300 |
Q |
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| T |
42442869 |
ctctttctcttttcaacaatagcaaaaccagtgagttttgtgctcctttaacatcatttgattggaatgaaattgagcccaaacgaattggaacttcaag |
42442770 |
T |
|
| Q |
301 |
tattgacactacttgtactatctgggacattgaaagaggcgttgttgaaacgcagttaattgcgcatgataaagaggtttatgatattgcttggggggaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42442769 |
tattgacactacttgtactatctgggacattgaaagaggcgttgttgaaacgcagttaattgcgcatgataaagaggtttatgatattgcttggggggaa |
42442670 |
T |
|
| Q |
401 |
tcaagggtttttgcttcggtttctgctgatgggtctgttaggatttttgatttaagggataaagagcattcaacaattatctatgaaagtccgcaacctg |
500 |
Q |
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| T |
42442669 |
tcaagggtttttgcttcggtttctgctgatgggtctgttaggatttttgatttaagggataaagagcattcaacaattatctatgaaagtccgcaacctg |
42442570 |
T |
|
| Q |
501 |
atacccctatgct |
513 |
Q |
| |
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|||||||| |||| |
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| T |
42442569 |
atacccctttgct |
42442557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 284 - 504
Target Start/End: Complemental strand, 32738573 - 32738353
Alignment:
| Q |
284 |
cgaattggaacttcaagtattgacactacttgtactatctgggacattgaaagaggcgttgttgaaacgcagttaattgcgcatgataaagaggtttatg |
383 |
Q |
| |
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|||||||| ||||| |||||||| || || |||||||| ||||| ||||| | || ||||| |||||||||||||| ||||||||||||||||||| |
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| T |
32738573 |
cgaattggtacttccagtattgatacaacgtgtactatttgggatattgagaaagaaaccgttgatacgcagttaattgcccatgataaagaggtttatg |
32738474 |
T |
|
| Q |
384 |
atattgcttggggggaatcaagggtttttgcttcggtttctgctgatgggtctgttaggatttttgatttaagggataaagagcattcaacaattatcta |
483 |
Q |
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|||| |||||||| | | |||||||| ||||||||||||||||||||||||||| ||||||||||| | |||||||| ||||| || || || || |
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| T |
32738473 |
atatagcttggggtggtgttggtgtttttgcatcggtttctgctgatgggtctgttagggtttttgatttacgtgataaagaacattctactataattta |
32738374 |
T |
|
| Q |
484 |
tgaaagtccgcaacctgatac |
504 |
Q |
| |
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|||||| | |||||||||| |
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| T |
32738373 |
cgaaagttctgaacctgatac |
32738353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 17047489 - 17047406
Alignment:
| Q |
12 |
tcaatttcaaccccgataccctctcactcaaacctcaaccttcactctccttcgatcacccttacccaccaaccaaactcatgtt |
96 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
17047489 |
tcaatttcaacca-gataccctctcactcaaacctcatccttcactctccttcgatcatccttacccacccaccaaactcatgtt |
17047406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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