View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1200_high_6 (Length: 466)
Name: NF1200_high_6
Description: NF1200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1200_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 12813602 - 12814054
Alignment:
| Q |
1 |
cttcctcaactcttcttgtaggccatcaccagtaagccacccacgaaacacaccacgatccaacaaatacacaattgactgccgccacatatatannnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12813602 |
cttcctcaactcttcttgtaggccatcaccagtaagccacccacgaaacacaccacgatccaacaaatacacaattgac---cgccacatatatattttt |
12813698 |
T |
|
| Q |
101 |
nnacattccattttaaccctatcttctaaacataaaatannnnnnnggatcaatgtcatgaaatattaaccctctcactccttcttctaagaaaattttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813699 |
ttacattccattttaaccctatcttctaaacataaaatatttttttggatcaatgtcatgaaatattaaccctctcactccttcttctaagaaaattttg |
12813798 |
T |
|
| Q |
201 |
acaaaggtcatatatagtgcatggttagaacgtgttgaaaaacaaaacgccctctttatagaaactgataggtacttataatctaatcatgctctgcaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813799 |
acaaaggtcatatatagtgcatggttagaacgtgttgaaaaacaaaacgccccctttatagaaactgataggtacttataatctaatcatgctctgcaaa |
12813898 |
T |
|
| Q |
301 |
tctaatatgtattacaacattcctcaaattttcagttctctttattttattttacgaatcctttgaattgcacttttcatactccttatatggcatactt |
400 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813899 |
tctattatgtattacaacattcctcaaattttcagttctctttattttattttacgaatcctttgaattgcacttttcatactccttatatggcatactt |
12813998 |
T |
|
| Q |
401 |
gtcgtcaatgatttgatattgctgctcacatgactcaaacttacgggtagtctctg |
456 |
Q |
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| T |
12813999 |
accgtcaattatttgatattgctgctcacatgactcaaacttacgggtagtctctg |
12814054 |
T |
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Back To:
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Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 22418304 - 22418378
Alignment:
| Q |
2 |
ttcctcaactcttcttgtaggccatcaccagtaagccacccacgaaacacaccacgatccaacaaatacacaatt |
76 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
22418304 |
ttcctcaactcttcttgtaggccatcactagtaagccacccacgaaacacaccacgatccaacaaatacgcaatt |
22418378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 30622036 - 30622111
Alignment:
| Q |
1 |
cttcctcaactcttcttgtaggccatcaccagtaagccacccacgaaacacaccacgatccaacaaatacacaatt |
76 |
Q |
| |
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|||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
30622036 |
cttcctcaactcctcttgtgggccatcaccagtaagccacccacgaaaaacaccacgatccaacaaatacgcaatt |
30622111 |
T |
|
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