View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1200_high_9 (Length: 459)
Name: NF1200_high_9
Description: NF1200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1200_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 3 - 444
Target Start/End: Complemental strand, 8006597 - 8006152
Alignment:
| Q |
3 |
aatattgtatcgtttcatcttttatacgtttgggatcatactgattgttgcttcnnnnnnnnnnnnnnggattnnnnnnntccattgttcctatgctact |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
8006597 |
aatattgtatcgtttcatcttttatacgtttgggatcatactgattgttgcttctttttttcttttttggattgggggggtccattgttcctatgctact |
8006498 |
T |
|
| Q |
103 |
ttttagagcatatgtatttt-cagttcaccaatccccaaggaacttataaaccacatcaagtgtgatacaagtgtcttacttcgcataggtgcattgaga |
201 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8006497 |
ttttagagcatatgtatttttcagttcaccaatccccaaggaacttataaaccacatcaagtgtgatacaagtgtcttacctcgcataggtgcattgaga |
8006398 |
T |
|
| Q |
202 |
gaggtcaggatttgttttaaccatctatatagtatttatgagcaagtgattgtcgtcaaattcgttttgactgaaattagttttggatttattttgcaga |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8006397 |
gaggtcaggatttgttttaaccatctatatagtatttatgagcaagtgatcgtcgtcaaattcgttttgactgaaattagttttggatttattttgcaga |
8006298 |
T |
|
| Q |
302 |
tgaatttggaatactttccaatagatagccaggtatataatgataaaactatttcatgcttctggcaatgtatttcatgtttct---ggnnnnnnnctat |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
8006297 |
tgaatttggaatactttccaatagatagccaggtatataatgataaaactatttcatgcttctggcaatgtatttcatgtttctgaagaaaaaaaactat |
8006198 |
T |
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| Q |
399 |
ctgcatgagtttactgatttatgagaggacattctataagcatgat |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8006197 |
ctgcatgagtttactgatttatgagaggacattctataagcatgat |
8006152 |
T |
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