View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1200_low_12 (Length: 402)
Name: NF1200_low_12
Description: NF1200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1200_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 42453912 - 42454128
Alignment:
| Q |
1 |
tgtttggtttctttattttctaaggcatccaatgttccgttcaccttttcctccattttatgaaaattggattcgaaggatgccttcaaaattagatagc |
100 |
Q |
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| T |
42453912 |
tgtttggtttctttattttctaaggcatccaatgttccgttcaccttttcctccattttatgaaaattggattcgaaggatgccttcaaaattagatagc |
42454011 |
T |
|
| Q |
101 |
atgatatgaaaatgcagctctatggttcttttttatcaggaaattaggaataagccaacattgatgcagatgcaatttgcttagttattttgtttttaat |
200 |
Q |
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| T |
42454012 |
atgatatgaaaatgcagctctatggttcttttttatcaggaaattaggaataagccaacattgatgcagatgcaatttgcttagttattttgtttttaat |
42454111 |
T |
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| Q |
201 |
gatgaatattttattta |
217 |
Q |
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||||||||||||||||| |
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| T |
42454112 |
gatgaatattttattta |
42454128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 42454124 - 42454182
Alignment:
| Q |
257 |
atttattgatgtttttattggttgtgcaaatactctctgaaattaggtttttggaacct |
315 |
Q |
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| T |
42454124 |
atttattgatgtttttattggttgtgcaaatactctctgaaattaggtttttggaacct |
42454182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 288
Target Start/End: Complemental strand, 47973351 - 47973248
Alignment:
| Q |
189 |
tttgtttttaatgatgaatattttat--ttaagtttatcatcacacttattaattcatattttggacttcatttattga--tgtttttattggttgtgca |
284 |
Q |
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| T |
47973351 |
tttgtttttagtgattaataatttatattttattttatcatctcacttataaattcatattttggtcttcatgtatttacgtttttttatttgttgtgca |
47973252 |
T |
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| Q |
285 |
aata |
288 |
Q |
| |
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|||| |
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| T |
47973251 |
aata |
47973248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 47973419 - 47973357
Alignment:
| Q |
101 |
atgatatgaaaatgcagctctatggttcttttttatcaggaaattaggaataagccaacattgat |
165 |
Q |
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||||||||||| |||| || | ||||||||||| || ||||| |||||||||||||||||||||| |
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| T |
47973419 |
atgatatgaaagtgcaactttgtggttcttttt-attaggaa-ttaggaataagccaacattgat |
47973357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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