View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1200_low_15 (Length: 351)

Name: NF1200_low_15
Description: NF1200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1200_low_15
NF1200_low_15
[»] chr7 (2 HSPs)
chr7 (152-342)||(3626794-3626984)
chr7 (153-220)||(24857329-24857396)
[»] chr2 (4 HSPs)
chr2 (153-342)||(21466414-21466603)
chr2 (153-342)||(33224131-33224320)
chr2 (263-342)||(26648147-26648226)
chr2 (152-199)||(8078495-8078542)
[»] chr6 (4 HSPs)
chr6 (150-342)||(8370985-8371177)
chr6 (155-342)||(513859-514046)
chr6 (152-342)||(34845191-34845381)
chr6 (153-342)||(15137045-15137236)
[»] chr5 (1 HSPs)
chr5 (161-342)||(39174982-39175163)
[»] chr4 (4 HSPs)
chr4 (182-342)||(34132057-34132217)
chr4 (180-342)||(53911844-53912006)
chr4 (154-342)||(29582393-29582585)
chr4 (173-262)||(21181493-21181582)
[»] chr3 (5 HSPs)
chr3 (266-342)||(35204417-35204493)
chr3 (145-262)||(35204474-35204581)
chr3 (35-75)||(35204659-35204699)
chr3 (153-205)||(17711928-17711980)
chr3 (153-205)||(19013185-19013237)
[»] chr8 (1 HSPs)
chr8 (153-188)||(28524402-28524437)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 152 - 342
Target Start/End: Complemental strand, 3626984 - 3626794
Alignment:
Q  152 gcagtggcggtgccacatataagtgagaggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctcc 251  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3626984 gcagtggtggtgccacatataagtgaggggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgcttgaacctcc 3626885  T
Q  252 tgatattttaaggatgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatga 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3626884 tgatattttaaggatgaacctcctcatattttaacattgcaattgagccaaacattttgcaccaataacccaagtttctctcaccctatga 3626794  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 24857396 - 24857329
Alignment:
Q  153 cagtggcggtgccacatataagtgagaggatgcacttgcatcccctgagcttttaaaatttgcacatg 220  Q
    ||||||||| |||||||| ||||||| |||||||  |||||||||||   ||| ||||||||||||||    
T  24857396 cagtggcggagccacatacaagtgaggggatgcagatgcatcccctggattttcaaaatttgcacatg 24857329  T

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Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 153 - 342
Target Start/End: Original strand, 21466414 - 21466603
Alignment:
Q  153 cagtggcggtgccacatataagtgagaggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctcct 252  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  21466414 cagtggcggtgccacatataagtgaggggatgcacttgcatcccctgatcttttaaaatttgcacatgattgcagtgttttattagtgcttgaacctcct 21466513  T
Q  253 gatattttaaggatgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatga 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21466514 gatattttaaggatgaacctcctcatattttaacattgcaattgagccaaacattttgcaccaataacccaagtttctctcaccctatga 21466603  T

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Target: chr2; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 153 - 342
Target Start/End: Original strand, 33224131 - 33224320
Alignment:
Q  153 cagtggcggtgccacatataagtgagaggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctcct 252  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33224131 cagtggtggtgccacatataagtgaggggatgcacttgcatcccctggacttttaaaatttccacatgattgcactgttttattagtgtttgaacctcct 33224230  T
Q  253 gatattttaaggatgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatga 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||    
T  33224231 gatattttaaggatgaacctcctcatattttaacattgcaattgagccaaacatattgcaccaataatccaagtttctctcaccctatga 33224320  T

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Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 263 - 342
Target Start/End: Complemental strand, 26648226 - 26648147
Alignment:
Q  263 ggatgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatga 342  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26648226 ggatgaacctcctcatattttaacattgcaattgagccaaacattttgcaccaataacccaagtttctctcaccctatga 26648147  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 8078542 - 8078495
Alignment:
Q  152 gcagtggcggtgccacatataagtgagaggatgcacttgcatcccctg 199  Q
    ||||||||||||||||||| ||||||| |||||||  |||||||||||    
T  8078542 gcagtggcggtgccacatacaagtgaggggatgcagatgcatcccctg 8078495  T

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Target: chr6 (Bit Score: 161; Significance: 8e-86; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 150 - 342
Target Start/End: Complemental strand, 8371177 - 8370985
Alignment:
Q  150 aagcagtggcggtgccacatataagtgagaggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacct 249  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  8371177 aagcagtggcggtgccacatataagtgaggggatgcacttgcatctcctgagcttttaaaatttgcacatgattgtactgttttattagtgcttgaacct 8371078  T
Q  250 cctgatattttaaggatgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatga 342  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  8371077 cctgatattttaagaatgaacctcctcatatcttaacattgcaattgagccaaacattttgcaccaataacccaagtttctctcagcctatga 8370985  T

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Target: chr6; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 155 - 342
Target Start/End: Complemental strand, 514046 - 513859
Alignment:
Q  155 gtggcggtgccacatataagtgagaggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctcctga 254  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  514046 gtggcggtgccacatataagtgaggggatgcacttgcatcccttgggcttttaaaatttgcacatgattgcactgttttattagtgcttgaacctcctga 513947  T
Q  255 tattttaaggatgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatga 342  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  513946 tattttaaggatgaatctcctcatattttaacattgcaattgagccaaacattttgcaccaataatccaagtttctctcaccctatga 513859  T

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Target: chr6; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 152 - 342
Target Start/End: Complemental strand, 34845381 - 34845191
Alignment:
Q  152 gcagtggcggtgccacatataagtgagaggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctcc 251  Q
    ||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34845381 gcagtggcggtgccacatataagtgaggggatgcacttgcatttcctgagcttttaaaatttgcacatgattgcactgttttattagtgcttgaacctcc 34845282  T
Q  252 tgatattttaaggatgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatga 342  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  34845281 tgatattttaaggaagaatctcctcatattttaacattgcaattgagccaaacattttacaccaataacccaagtttctctcaccctatga 34845191  T

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Target: chr6; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 153 - 342
Target Start/End: Original strand, 15137045 - 15137236
Alignment:
Q  153 cagtggcggtgccacatataagtgagaggatgcac--ttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctc 250  Q
    |||||||||||||||||||||||||| ||||||||  |||||||| ||| |||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  15137045 cagtggcggtgccacatataagtgaggggatgcacacttgcatcctctgggcttttaaaatttgcacatgattgtactgttttattagtgcttgaacctc 15137144  T
Q  251 ctgatattttaaggatgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatga 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15137145 ctgatattttaaggatgaacctcctcatattttaacattgcaattgagccaaacattttgcaccaataacccaagtttctctcaccctatga 15137236  T

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Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 161 - 342
Target Start/End: Original strand, 39174982 - 39175163
Alignment:
Q  161 gtgccacatataagtgagaggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctcctgatatttt 260  Q
    |||||||||||||||||| |||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  39174982 gtgccacatataagtgaggggatgcacttgcattccctggacttttaaaatttgcacatgattgcactgttttattagtgcttaaacctcctgatatttt 39175081  T
Q  261 aaggatgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatga 342  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39175082 aaggatgaacctcctcatattttaacattgcaattgagccaaacattttgcaccaataacccaagtttctctcaccctatga 39175163  T

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Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 182 - 342
Target Start/End: Original strand, 34132057 - 34132217
Alignment:
Q  182 atgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctcctgatattttaaggatgaacctcctcatatt 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  34132057 atgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgcttgaacctcctgatattttaaggatgaaccttctcatatt 34132156  T
Q  282 ttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatga 342  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34132157 ttaacattgcaattgagccaaacattttgcaccaataacccaagtttctctcaccctatga 34132217  T

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Target: chr4; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 180 - 342
Target Start/End: Original strand, 53911844 - 53912006
Alignment:
Q  180 ggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctcctgatattttaaggatgaacctcctcata 279  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  53911844 ggatgcacttgcatcccctgggcttttaaaatttgcacatgattgcactgttttattagtgcttaaacctcctgatattttaaggatgaacctcctcata 53911943  T
Q  280 ttttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatga 342  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  53911944 ttttaacattgcaattgagccaaacattttgcaccaataatccaagtttctctcaccctatga 53912006  T

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Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 154 - 342
Target Start/End: Complemental strand, 29582585 - 29582393
Alignment:
Q  154 agtggcggtgccacatataagtgagaggat--gcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctcc 251  Q
    |||||||| ||||| ||||| |||||| ||  ||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| |  ||||| |||     
T  29582585 agtggcggagccacgtataaatgagagaatatgcagttgcatctcctaagcttttaaaatttgcacatgattgcactgttttattactacttgaatctca 29582486  T
Q  252 tgatattttaaggatgaacctcct--catattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatga 342  Q
    ||||||||||||||| ||||||||   |||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  29582485 tgatattttaaggatcaacctcctgatatattttaacattgcacttgagccaaacattttgcaccaataacccaagtttccctcaccctatga 29582393  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 262
Target Start/End: Complemental strand, 21181582 - 21181493
Alignment:
Q  173 agtgagaggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttgaacctcctgatattttaa 262  Q
    |||||| |||||||  |||||||||||  |||||||| |||||||||||| ||||||||||  |  |  |||||||| ||||||||||||    
T  21181582 agtgaggggatgcagctgcatcccctggacttttaaattttgcacatgatggcactgttttcatgctacttgaacctactgatattttaa 21181493  T

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Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 266 - 342
Target Start/End: Complemental strand, 35204493 - 35204417
Alignment:
Q  266 tgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatga 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35204493 tgaacctcctcatattttaacattgcaattgacccaaacattttgcaccaataacccaagtttctctcaccctatga 35204417  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 145 - 262
Target Start/End: Complemental strand, 35204581 - 35204474
Alignment:
Q  145 gatctaagcagtggcggtgccacatataagtgagaggatgcacttgcatcccctgagcttttaaaatttgcacatgattgcactgttttattagtgtttg 244  Q
    |||||||||||||||||||||||||||||||||| |||||||  |           |||||||||||||||||||||||||||||||||||||||| |||    
T  35204581 gatctaagcagtggcggtgccacatataagtgaggggatgcaagtt----------gcttttaaaatttgcacatgattgcactgttttattagtgcttg 35204492  T
Q  245 aacctcctgatattttaa 262  Q
    |||||||| |||||||||    
T  35204491 aacctcctcatattttaa 35204474  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 35204699 - 35204659
Alignment:
Q  35 gatacgagaaagagtaatatactacccaaccttgcaatccg 75  Q
    |||||||| ||||||||||||||||||||||| ||||||||    
T  35204699 gatacgagtaagagtaatatactacccaacctcgcaatccg 35204659  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 17711928 - 17711980
Alignment:
Q  153 cagtggcggtgccacatataagtgagaggatgcacttgcatcccctgagcttt 205  Q
    ||||||||| ||||| ||  | |||||||||||||||||||||||||| ||||    
T  17711928 cagtggcggagccacgtaccattgagaggatgcacttgcatcccctgaccttt 17711980  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 19013185 - 19013237
Alignment:
Q  153 cagtggcggtgccacatataagtgagaggatgcacttgcatcccctgagcttt 205  Q
    ||||||||| ||||| ||  | |||||||||||||||||||||||||| ||||    
T  19013185 cagtggcggagccacgtaccattgagaggatgcacttgcatcccctgaccttt 19013237  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 188
Target Start/End: Complemental strand, 28524437 - 28524402
Alignment:
Q  153 cagtggcggtgccacatataagtgagaggatgcact 188  Q
    |||||||||||||||||||||||||| |||||||||    
T  28524437 cagtggcggtgccacatataagtgaggggatgcact 28524402  T

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