View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1200_low_18 (Length: 338)
Name: NF1200_low_18
Description: NF1200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1200_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 56 - 309
Target Start/End: Complemental strand, 44108623 - 44108370
Alignment:
| Q |
56 |
caaaggcataattttggcttaagaatcaaatactaatgatatcnnnnnnnnnnacaataatcctaaatatatcataatgatatcttattcttgtttgtag |
155 |
Q |
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| T |
44108623 |
caaaggcataattttggcttaagaatcaaatactaatgatatcttttttttttacaataatcctaaatatatcataatgatatcttattcttgtttgtag |
44108524 |
T |
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| Q |
156 |
atgaaatgacaaacatcattataatctcacacatacaaaatggaagaatttgaaacactattaaaggattactcaagaatttagttttacataggacata |
255 |
Q |
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| T |
44108523 |
atgaaatgacaaacatcattataatctcacacatacaaaatggaagaatttgaaacactattaaaggattactcaagaatttagttttacataggacata |
44108424 |
T |
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| Q |
256 |
actaaaggccttgaacacaatgaagccttgcttctaagcatttatcacggtaag |
309 |
Q |
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| T |
44108423 |
actaaaggccttgaacacaatgaagccttgcttctaagcatttatcacggtaag |
44108370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 44115304 - 44115242
Alignment:
| Q |
218 |
aaaggattactcaagaatttagttttacataggacataactaaaggccttgaacacaatgaag |
280 |
Q |
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| T |
44115304 |
aaaggattatttgagaatttagttttacataggatataactaaagaccttgaacaaaatgaag |
44115242 |
T |
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