View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1200_low_19 (Length: 335)
Name: NF1200_low_19
Description: NF1200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1200_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 161 - 324
Target Start/End: Original strand, 14223430 - 14223593
Alignment:
| Q |
161 |
ttgtaaaattttatattttgaatgaaaacatagactgcaaatccttttcttttgatcaattggatttgggctcttatatctatattaaatagggtaaaac |
260 |
Q |
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| T |
14223430 |
ttgtaaaattttatattttgaatgaaaacatagactgcaattccttttcttttgatcaattggagttgggctcttaaatctatattaaatagggtaaaac |
14223529 |
T |
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| Q |
261 |
atttctagtcaatgttgcagacggctccgtagaatttgtactttgacaaatttatttggtctgt |
324 |
Q |
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| T |
14223530 |
atttctagtcaatgttgcagacggctccgtagaatttgtactttgacaaatttatttggtctgt |
14223593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 8167737 - 8167816
Alignment:
| Q |
6 |
agaaagaactcaataaccaaatatgaaagaaaactttgttttgttcccaaaatatggaactgactctttcttttttagaa |
85 |
Q |
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| T |
8167737 |
agaaagaactcaataaccaaatatgaaagaaaactttgttttggtcccaaaatatggaaccgactctttcttttatagaa |
8167816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 171
Target Start/End: Original strand, 14227927 - 14228004
Alignment:
| Q |
94 |
cttgtattcttttggcctagtttattcatacctaatcaggactattcaaagcttgtattgaagcaccttgtaaaattt |
171 |
Q |
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| T |
14227927 |
cttgtattcttttggcctcgtttattcgtttttaatcaggactggtctaagctagttttgaagctccttgtcaaattt |
14228004 |
T |
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