View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1200_low_21 (Length: 326)
Name: NF1200_low_21
Description: NF1200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1200_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 30347057 - 30347282
Alignment:
| Q |
21 |
tactatatacaacttaaattttatgtacggatacactaatggtccaaaattaaaagttatggtgacaagaaataaatgaacaaaacactccaagg----- |
115 |
Q |
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| T |
30347057 |
tactatatacaacttaaattttatgtacggatacactaatggtccaaaattgaaagttatggtgacaagaaataaatggacaaaacactccaaggaaccc |
30347156 |
T |
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| Q |
116 |
gcctcaaggtggcgt--ttgattgtgttgcctgtttggttgtcggttggcctaaacatgacgatgagggt-aattttttaaatggggggagagattatcc |
212 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||| |||||| ||||||||||||| ||||| |||||||||||| |||||||||||||||| |
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| T |
30347157 |
gcctcaaggtggcgtacttgattgtgttgcctatttggttgtcagttggcttaaacatgacgatcagggtaaattttttaaat-gggggagagattatcc |
30347255 |
T |
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| Q |
213 |
aaaaataagaaaagaatgttggagtat |
239 |
Q |
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||||||||||| ||||||||||||||| |
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| T |
30347256 |
aaaaataagaatagaatgttggagtat |
30347282 |
T |
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