View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1200_low_27 (Length: 292)
Name: NF1200_low_27
Description: NF1200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1200_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 30 - 279
Target Start/End: Complemental strand, 40497051 - 40496801
Alignment:
| Q |
30 |
tgagttacactccaaatgtgcagccctgggtgtgttgagaagtgagataatgtctaaaaatgtgtttataagtggcgggcagttctcgccttataagtcg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40497051 |
tgagttacactccaaatgtgcagccctgggtgtgttgagaagtgagataatgtctaaaaatgtgtttataagtggcgggcagttctcgccttataagtcg |
40496952 |
T |
|
| Q |
130 |
gttttgcagggttgaga-atactcaacccaaatcctaagacttttattttcttgtttgtaggtgatcgctgactttgatgccacattgacgaagttttgg |
228 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40496951 |
gttttgcagggttgagatattctcaacccaaatcctaagacttttattttcttgtttgtaggtgatcgctgactttgatgccacattgacgaagttttgg |
40496852 |
T |
|
| Q |
229 |
gttaatggaactcgaggccaaagtatgttacatgaaaattttattccccct |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40496851 |
gttaatggaactcgaggccaaagtatgttacatgaaaattttattccccct |
40496801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 2805359 - 2805413
Alignment:
| Q |
81 |
gtctaaaaatgtgtttataagtggcgggcagttctcgccttataagtcggttttg |
135 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| ||||| ||| |||||| ||||||| |
|
|
| T |
2805359 |
gtctaacaatgtgtttataagtggggggcaattctcacctcataagttggttttg |
2805413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 27724482 - 27724531
Alignment:
| Q |
86 |
aaaatgtgtttataagtggcgggcagttctcgccttataagtcggttttg |
135 |
Q |
| |
|
||||||| ||||||||||| || |||| |||||||||||| ||||||||| |
|
|
| T |
27724482 |
aaaatgtatttataagtggtggacagtcctcgccttataaatcggttttg |
27724531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 40282701 - 40282741
Alignment:
| Q |
94 |
tttataagtggcgggcagttctcgccttataagtcggtttt |
134 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
40282701 |
tttataagtggcggacagtcctcaccttataagtcggtttt |
40282741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University