View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1200_low_29 (Length: 276)

Name: NF1200_low_29
Description: NF1200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1200_low_29
NF1200_low_29
[»] chr2 (9 HSPs)
chr2 (9-248)||(4142786-4143031)
chr2 (70-131)||(21616747-21616808)
chr2 (75-156)||(16069272-16069352)
chr2 (84-130)||(1239687-1239733)
chr2 (70-124)||(19573970-19574024)
chr2 (70-116)||(31456654-31456700)
chr2 (75-154)||(19536415-19536495)
chr2 (75-131)||(21091708-21091764)
chr2 (70-130)||(31808063-31808123)
[»] chr7 (15 HSPs)
chr7 (75-156)||(27945001-27945082)
chr7 (77-164)||(21141002-21141089)
chr7 (65-130)||(5235972-5236037)
chr7 (70-130)||(22868028-22868088)
chr7 (75-131)||(32308105-32308161)
chr7 (80-131)||(11722121-11722172)
chr7 (75-162)||(24339596-24339683)
chr7 (79-121)||(7758317-7758359)
chr7 (70-130)||(3554519-3554579)
chr7 (70-130)||(5835233-5835293)
chr7 (70-130)||(6630925-6630985)
chr7 (75-131)||(13770676-13770732)
chr7 (70-130)||(22484011-22484071)
chr7 (75-123)||(28155563-28155611)
chr7 (75-123)||(29787387-29787435)
[»] chr5 (11 HSPs)
chr5 (76-164)||(6770495-6770583)
chr5 (75-131)||(15410466-15410522)
chr5 (75-127)||(34879339-34879391)
chr5 (75-122)||(27932229-27932276)
chr5 (70-156)||(22013374-22013460)
chr5 (75-164)||(21522702-21522791)
chr5 (75-164)||(21533268-21533357)
chr5 (70-130)||(6035469-6035528)
chr5 (75-131)||(6326315-6326371)
chr5 (70-130)||(12927640-12927700)
chr5 (92-156)||(19820429-19820493)
[»] chr3 (12 HSPs)
chr3 (75-164)||(16000034-16000123)
chr3 (76-155)||(4466619-4466698)
chr3 (75-167)||(4990985-4991077)
chr3 (70-124)||(8039848-8039902)
chr3 (70-124)||(8383249-8383303)
chr3 (70-131)||(18426934-18426995)
chr3 (70-125)||(12703998-12704053)
chr3 (75-129)||(9800027-9800081)
chr3 (77-131)||(23870579-23870633)
chr3 (70-131)||(29112293-29112354)
chr3 (75-131)||(2620071-2620127)
chr3 (70-130)||(35222924-35222984)
[»] chr8 (8 HSPs)
chr8 (70-122)||(14634154-14634206)
chr8 (70-130)||(4786351-4786411)
chr8 (70-121)||(7658458-7658509)
chr8 (70-156)||(24362215-24362301)
chr8 (70-131)||(34897070-34897131)
chr8 (70-130)||(13844609-13844669)
chr8 (70-130)||(14134685-14134745)
chr8 (70-130)||(39954292-39954352)
[»] scaffold0306 (1 HSPs)
scaffold0306 (78-156)||(13360-13438)
[»] scaffold0152 (1 HSPs)
scaffold0152 (78-156)||(21889-21967)
[»] chr6 (17 HSPs)
chr6 (70-131)||(9658864-9658925)
chr6 (70-164)||(7938068-7938162)
chr6 (70-151)||(2153900-2153981)
chr6 (70-155)||(3398580-3398664)
chr6 (70-154)||(7996391-7996475)
chr6 (70-154)||(8022326-8022410)
chr6 (70-129)||(26562676-26562735)
chr6 (80-118)||(322517-322555)
chr6 (70-164)||(13851688-13851782)
chr6 (75-161)||(16766652-16766738)
chr6 (70-124)||(19040344-19040398)
chr6 (70-131)||(7265606-7265667)
chr6 (70-115)||(8389485-8389530)
chr6 (75-164)||(8776991-8777080)
chr6 (75-156)||(12696285-12696365)
chr6 (75-140)||(23771555-23771619)
chr6 (75-151)||(34595099-34595175)
[»] chr1 (13 HSPs)
chr1 (75-156)||(10572607-10572688)
chr1 (70-164)||(398778-398872)
chr1 (81-129)||(609482-609530)
chr1 (75-123)||(5376518-5376566)
chr1 (70-130)||(36878447-36878507)
chr1 (76-131)||(2896140-2896195)
chr1 (69-124)||(34298428-34298483)
chr1 (70-156)||(39130780-39130866)
chr1 (75-124)||(9828036-9828085)
chr1 (70-151)||(15641043-15641124)
chr1 (75-127)||(12443478-12443530)
chr1 (70-130)||(13436444-13436504)
chr1 (75-131)||(39953164-39953220)
[»] scaffold0004 (1 HSPs)
scaffold0004 (75-131)||(92792-92848)
[»] scaffold0039 (1 HSPs)
scaffold0039 (70-129)||(84986-85045)
[»] chr4 (6 HSPs)
chr4 (70-148)||(36635292-36635370)
chr4 (65-130)||(21539875-21539940)
chr4 (75-131)||(22234908-22234965)
chr4 (70-151)||(24343472-24343553)
chr4 (75-119)||(17446068-17446112)
chr4 (75-131)||(56488528-56488584)
[»] scaffold0022 (1 HSPs)
scaffold0022 (70-130)||(90829-90889)
[»] scaffold0018 (1 HSPs)
scaffold0018 (75-131)||(192267-192323)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 4142786 - 4143031
Alignment:
Q  9 gattattctaaacagtgttactatgaagcattagccatgcttcacgtccaacatttatatgtatatttacactgaattatat------aattttcttaaa 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||   | ||||||||||||||||||||||||      ||||||||||||    
T  4142786 gattattctaaacagtgttactatgaagcattagccatgcttcacgtccgtcaccaacatgtatatttacactgaattatataaatataattttcttaaa 4142885  T
Q  103 ttgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtgttttattgattagatctagttatcaaggtagacattaa 202  Q
    |||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||    
T  4142886 ttgttagtggtgtcggcgtgtcagtgtccgggtcgtgttcggtgtccgtatccgaatccgtgttttattgactagatctaattatcaatgtagacattaa 4142985  T
Q  203 aataggacatcaatgagtcttatgtttaggaaataaggtccagttt 248  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  4142986 aataggatatcaatgagtcttatgtttaggaaataaggtccagttt 4143031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 21616808 - 21616747
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 131  Q
    |||| |||||||||||||| | ||||||| ||||| |||| |||||||||||||||||||||    
T  21616808 tataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtccgtgtcc 21616747  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 16069272 - 16069352
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccg 156  Q
    |||||||||||||||| ||||| ||||||| |||  |||||||||||||| ||||||  |||||  || |||||||||||||    
T  16069272 ttacactgaattatatgatttttttaaattattaacggtgtcggcgtgtcagtgtccgtgtcat-atctgtgtccgtatccg 16069352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 1239687 - 1239733
Alignment:
Q  84 attatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 130  Q
    ||||||| ||||||||||||| ||| || ||||||||||||||||||    
T  1239687 attatatgattttcttaaattattaatgatgtcggcgtgtccgtgtc 1239733  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 19574024 - 19573970
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtc 124  Q
    |||| |||||||||||||| | ||||||||||||| |||  ||||||||||||||    
T  19574024 tataattacactgaattatgttattttcttaaattattatcggtgtcggcgtgtc 19573970  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 31456654 - 31456700
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtc 116  Q
    |||| ||||||||||||| |||||||||||||||| |||| ||||||    
T  31456654 tataattacactgaattacataattttcttaaattattagcggtgtc 31456700  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 19536415 - 19536495
Alignment:
Q  75 ttacactgaattatataattttctt-aaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatc 154  Q
    |||||||||||||| | ||||| || ||||| ||||| |||||||||||||  |||||  ||| ||| |||||||||||||    
T  19536415 ttacactgaattatgtgatttttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatc 19536495  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 21091764 - 21091708
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 131  Q
    |||||||||| ||| | ||||||||||||| |||| |||||||| ||||| ||||||    
T  21091764 ttacactgaagtatgttattttcttaaattattagcggtgtcggtgtgtcagtgtcc 21091708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 31808123 - 31808063
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 130  Q
    |||| |||||||||||||| | ||||| ||||||| |||| |||||||| ||||| |||||    
T  31808123 tataattacactgaattatgtgattttgttaaattattagcggtgtcggtgtgtcagtgtc 31808063  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 27945082 - 27945001
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccg 156  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||||||||| ||||||  ||| ||| |||||||||||||||    
T  27945082 ttacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccg 27945001  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 164
Target Start/End: Original strand, 21141002 - 21141089
Alignment:
Q  77 acactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtg 164  Q
    |||||||||||||| ||||||||||||| |||||||||||| |||||| | ||||  ||| ||| |||||||||| |||| |||||||    
T  21141002 acactgaattatatgattttcttaaattattagtggtgtcgacgtgtcggcgtccgtgtcgtgtacggtgtccgtgtccgtatccgtg 21141089  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 5236037 - 5235972
Alignment:
Q  65 atatgtatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 130  Q
    |||| |||| ||||||| |||||||||||||||||||||| |||| ||||||| |||||| |||||    
T  5236037 atatatataattacactaaattatataattttcttaaattattagcggtgtcgacgtgtcagtgtc 5235972  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 22868088 - 22868028
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 130  Q
    |||| |||||||||||||| | ||||||| | ||| ||||||||||||||||||| |||||    
T  22868088 tataattacactgaattatgtgattttctcatattattagtggtgtcggcgtgtcagtgtc 22868028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 32308161 - 32308105
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 131  Q
    |||||||||||||| | ||||||| ||||| |||| |||||||||||||| ||||||    
T  32308161 ttacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtcc 32308105  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 11722121 - 11722172
Alignment:
Q  80 ctgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 131  Q
    ||||||||| | ||||||| |||||||||| |||||||||||||| ||||||    
T  11722121 ctgaattatgtgattttctcaaattgttagcggtgtcggcgtgtcagtgtcc 11722172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 162
Target Start/End: Complemental strand, 24339683 - 24339596
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccg 162  Q
    |||||||||||||| | ||||| | ||||| ||||  |||||||||||||  |||||  ||| ||| ||||||||||||||| |||||    
T  24339683 ttacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcaatgtccatgtcgtgtccggtgtccgtatccgtatccg 24339596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 7758359 - 7758317
Alignment:
Q  79 actgaattatataattttcttaaattgttagtggtgtcggcgt 121  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||    
T  7758359 actgaattatataattttctaaaattattagtggtgtcagcgt 7758317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 3554519 - 3554579
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 130  Q
    |||| ||||| | |||||| ||||||||||||||| | | ||||||||||||||| |||||    
T  3554519 tataattacattaaattatgtaattttcttaaattatcattggtgtcggcgtgtctgtgtc 3554579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 5835293 - 5835233
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 130  Q
    |||| |||||||||||||| | ||||||| ||| | |||||||||||||||| || |||||    
T  5835293 tataattacactgaattatgttattttctcaaactattagtggtgtcggcgtatcagtgtc 5835233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 6630925 - 6630985
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 130  Q
    |||| |||||||||||||  | | ||||| ||||| ||||||||||||||||||| |||||    
T  6630925 tataattacactgaattaagtgactttctcaaattattagtggtgtcggcgtgtcagtgtc 6630985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 13770732 - 13770676
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 131  Q
    |||||||||||||| ||||||| ||||||| ||||  |||||||||| || ||||||    
T  13770732 ttacactgaattatgtaatttttttaaattattagctgtgtcggcgtatcagtgtcc 13770676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 22484071 - 22484011
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 130  Q
    |||| ||| ||||||||||  |||||||| ||||| |||| |||||||||||||| |||||    
T  22484071 tataattatactgaattatgcaattttctaaaattattagcggtgtcggcgtgtcagtgtc 22484011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 28155611 - 28155563
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 123  Q
    |||||| ||||||| ||||||||| ||||| |||| |||||||||||||    
T  28155611 ttacaccgaattatgtaattttctcaaattattagcggtgtcggcgtgt 28155563  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 29787387 - 29787435
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 123  Q
    |||||||||||||| | ||||||| ||||| |||| |||||||||||||    
T  29787387 ttacactgaattatgtgattttctcaaattattagcggtgtcggcgtgt 29787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 6770583 - 6770495
Alignment:
Q  76 tacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtg 164  Q
    ||||||||||||| | ||||||||||||| ||||| ||||| | ||||| ||||||  ||||||||||||||||||||||| |||||||    
T  6770583 tacactgaattatgtgattttcttaaattattagttgtgtcagtgtgtcagtgtccgtgtcatgttcggtgtccgtatccgtatccgtg 6770495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 15410466 - 15410522
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 131  Q
    ||||||||||| |||||||||||||||||| |||| |||||||||||||| ||||||    
T  15410466 ttacactgaatcatataattttcttaaattattagcggtgtcggcgtgtcagtgtcc 15410522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 34879391 - 34879339
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgt 127  Q
    |||||||||||||||| ||||||| ||||| |||| |||| ||||||||||||    
T  34879391 ttacactgaattatatgattttctcaaatttttagcggtgccggcgtgtccgt 34879339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 27932276 - 27932229
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtg 122  Q
    |||||||||||||| ||||||||| ||||| |||| ||||||||||||    
T  27932276 ttacactgaattatgtaattttctcaaattattagcggtgtcggcgtg 27932229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 156
Target Start/End: Complemental strand, 22013460 - 22013374
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccg 156  Q
    |||| ||||||| |||||| |||||||   ||||| ||||  ||||||||||||| ||||||  ||| ||| |||||||||||||||    
T  22013460 tataattacactaaattatgtaatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccg 22013374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 164
Target Start/End: Complemental strand, 21522791 - 21522702
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtg 164  Q
    |||||||||||||| | ||||| | ||||| ||||  ||||||||||||| ||||||  ||| ||| ||||| |||| |||| |||||||    
T  21522791 ttacactgaattatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgtccgtatccgtg 21522702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 164
Target Start/End: Complemental strand, 21533357 - 21533268
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtg 164  Q
    |||||||||||||| | ||||| | ||||| ||||  ||||||||||||| ||||||  ||| ||| ||||| |||| |||| |||||||    
T  21533357 ttacactgaattatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgtccgtatccgtg 21533268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 6035528 - 6035469
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 130  Q
    |||| |||||||||||||||| |||| || ||||| |||| |||||||||||||| |||||    
T  6035528 tataattacactgaattatattattt-ctcaaattattagcggtgtcggcgtgtcagtgtc 6035469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 6326315 - 6326371
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 131  Q
    |||||||||||||| ||||||||| |||||  ||| | |||||||||||| ||||||    
T  6326315 ttacactgaattatgtaattttctcaaattactagcgatgtcggcgtgtcagtgtcc 6326371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 12927700 - 12927640
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 130  Q
    |||| ||||||| |||||||| ||||||| ||||| |||| | |||||| |||||||||||    
T  12927700 tataattacactaaattatatgattttctcaaattattagcgatgtcggtgtgtccgtgtc 12927640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 19820429 - 19820493
Alignment:
Q  92 attttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccg 156  Q
    ||||||| ||||| |||| |||||||| ||||| ||||||  ||| ||| |||||||||||||||    
T  19820429 attttctcaaattattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgtatccg 19820493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 164
Target Start/End: Original strand, 16000034 - 16000123
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtg 164  Q
    |||||||||||||| | ||||| ||||||| ||||| ||||||||||||| |||||   ||| |||||||||||||| |||| |||||||    
T  16000034 ttacactgaattatgttatttttttaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtgtccgtatccgtg 16000123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 4466619 - 4466698
Alignment:
Q  76 tacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatcc 155  Q
    ||||||||||||||| ||||||||||||| |||  |||||||| ||||| |||| |  ||||||| ||||||||||||||    
T  4466619 tacactgaattatatgattttcttaaattattaccggtgtcggagtgtcagtgttcgtgtcatgtccggtgtccgtatcc 4466698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 167
Target Start/End: Original strand, 4990985 - 4991077
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtgttt 167  Q
    |||||||||||||| ||||||||| ||| | |||| |||||||| ||||| || |||  ||| |||||||||||||| |||| || |||||||    
T  4990985 ttacactgaattatgtaattttctcaaactattagcggtgtcggagtgtcagtctccgtgtcgtgttcggtgtccgtgtccgtatacgtgttt 4991077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 8039848 - 8039902
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtc 124  Q
    |||| |||||||||||||||||||||||| ||||| |||| ||||| ||||||||    
T  8039848 tataattacactgaattatataattttctcaaattattagcggtgttggcgtgtc 8039902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 8383303 - 8383249
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtc 124  Q
    |||| |||||||||||||||| ||||||| ||||| |||| ||||||||||||||    
T  8383303 tataattacactgaattatatgattttctcaaattattagcggtgtcggcgtgtc 8383249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 18426995 - 18426934
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 131  Q
    |||| |||||| ||||||| | ||||| | ||||| ||||||||||||||||||||||||||    
T  18426995 tataattacaccgaattatgtgattttttgaaattattagtggtgtcggcgtgtccgtgtcc 18426934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 12704053 - 12703998
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtcc 125  Q
    |||| |||||||||||||| |  |||||| ||||| ||||||||||||||||||||    
T  12704053 tataattacactgaattatgtgcttttctcaaattattagtggtgtcggcgtgtcc 12703998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 9800081 - 9800027
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgt 129  Q
    |||||| ||||||| ||||||||| ||||| |||| |||||||||||||| ||||    
T  9800081 ttacacggaattatgtaattttctcaaattattagaggtgtcggcgtgtcagtgt 9800027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 23870579 - 23870633
Alignment:
Q  77 acactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 131  Q
    |||||||||||||| ||||| | ||||| |||| ||||||| |||||||||||||    
T  23870579 acactgaattatatgattttttcaaattattagcggtgtcgacgtgtccgtgtcc 23870633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 29112293 - 29112354
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 131  Q
    |||| |||||||||||||||| ||||||| ||||  |||||||||||  |||||| ||||||    
T  29112293 tataattacactgaattatatgattttctcaaataattagtggtgtcaacgtgtcagtgtcc 29112354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 2620071 - 2620127
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 131  Q
    ||||||| |||||| | ||||||| ||||  ||||||||||||||||||| ||||||    
T  2620071 ttacacttaattatgtgattttctcaaatgattagtggtgtcggcgtgtcagtgtcc 2620127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 35222984 - 35222924
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 130  Q
    |||| ||||| |||||||| | ||||||| ||| ||||||| ||||||||||||| |||||    
T  35222984 tataattacattgaattatgtgattttctaaaaatgttagttgtgtcggcgtgtctgtgtc 35222924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 14634154 - 14634206
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtg 122  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  14634154 tataattacactgaattatataattttcttaaattgttagcggtgtcgacgtg 14634206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 4786351 - 4786411
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 130  Q
    |||| |||||||||||||| | ||||||||||||| ||| ||||||||||||||| |||||    
T  4786351 tataattacactgaattatgtgattttcttaaattattaatggtgtcggcgtgtcagtgtc 4786411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 7658509 - 7658458
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgt 121  Q
    |||| |||||||||||||| ||||||||| ||||| ||||||||||||||||    
T  7658509 tataattacactgaattatgtaattttctcaaattattagtggtgtcggcgt 7658458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 24362215 - 24362301
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccg 156  Q
    |||| |||||||||||||| | ||| ||| ||||| |||| |||||||||||||| |||||   ||| | | |||||||||||||||    
T  24362215 tataattacactgaattatgtgattctctcaaattattagcggtgtcggcgtgtcggtgtctgtgtcgtatccggtgtccgtatccg 24362301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 34897131 - 34897070
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 131  Q
    |||| |||||||||||||| | ||||||| ||||| |||| ||||||| |||||| ||||||    
T  34897131 tataattacactgaattatgtgattttctcaaattattagcggtgtcgacgtgtctgtgtcc 34897070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 13844609 - 13844669
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 130  Q
    |||| ||||||| |||||| | ||||||| ||||| ||||  |||||||||||||||||||    
T  13844609 tataattacactcaattatgtgattttctcaaattattagcagtgtcggcgtgtccgtgtc 13844669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 14134745 - 14134685
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 130  Q
    |||| |||||||||||||| | ||||||| ||||| |||||  ||||| ||||||||||||    
T  14134745 tataattacactgaattatgtgattttctcaaattattagtattgtcgacgtgtccgtgtc 14134685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 39954292 - 39954352
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 130  Q
    |||| ||||||| |||||| | ||||||| ||||| |||| |||||||||||||| |||||    
T  39954292 tataattacactaaattatgtgattttctcaaattattagcggtgtcggcgtgtcggtgtc 39954352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 13438 - 13360
Alignment:
Q  78 cactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccg 156  Q
    ||||||||||| | ||||||| ||||| ||||| ||||||||||||| ||||||  ||||| | |||||||||||||||    
T  13438 cactgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccg 13360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 21889 - 21967
Alignment:
Q  78 cactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccg 156  Q
    ||||||||||| | ||||||| ||||| ||||| ||||||||||||| ||||||  ||||| | |||||||||||||||    
T  21889 cactgaattatgtgattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccg 21967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 9658925 - 9658864
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 131  Q
    |||| |||||||||||||| | ||||||||||||| |||| |||||||||||||| ||||||    
T  9658925 tataattacactgaattatgtgattttcttaaattattagcggtgtcggcgtgtcagtgtcc 9658864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 7938162 - 7938068
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtg 164  Q
    |||| ||||||| |||||||| ||||| | ||||| ||||  ||||||||||||| ||||||  ||| ||| |||||||||| |||| |||||||    
T  7938162 tataattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgtatccgtg 7938068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 2153900 - 2153981
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgt 151  Q
    |||| ||||||| |||||||| ||||||||||||| ||  | ||||||||||||| ||||||  ||||||| || |||||||    
T  2153900 tataattacactaaattatatcattttcttaaattattgttcgtgtcggcgtgtcggtgtccgtgtcatgtccgatgtccgt 2153981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 3398664 - 3398580
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatcc 155  Q
    |||| |||||||||||||||| ||||| | ||||| ||||  ||||||||||||| ||||||  ||| |||||| |||||||||||    
T  3398664 tataattacactgaattatatgatttt-tcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgttcgatgtccgtatcc 3398580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 7996391 - 7996475
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatc 154  Q
    |||| |||||||||||||||| ||||||| ||||| ||||  |||||||| |||| ||||||  ||||||| | ||||| |||||    
T  7996391 tataattacactgaattatatgattttctcaaattattagcagtgtcggcatgtcagtgtccttgtcatgtactgtgtctgtatc 7996475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 8022410 - 8022326
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatc 154  Q
    |||| |||||||||||||||| ||||||| ||||| ||||  |||||||| |||| ||||||  ||||||| | ||||| |||||    
T  8022410 tataattacactgaattatatgattttctcaaattattagcagtgtcggcatgtcagtgtccttgtcatgtactgtgtctgtatc 8022326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 26562735 - 26562676
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgt 129  Q
    |||| |||||||||||||| | ||||||| ||||| ||||  ||||||||||||||||||    
T  26562735 tataattacactgaattatgtgattttctcaaatttttagcagtgtcggcgtgtccgtgt 26562676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 322555 - 322517
Alignment:
Q  80 ctgaattatataattttcttaaattgttagtggtgtcgg 118  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  322555 ctgaattatgtaattttcttaaattattagtggtgtcgg 322517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 13851782 - 13851688
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtg 164  Q
    |||| |||||||||||||  | ||||||| ||||| |||| ||||||| |||||| ||||||  ||| |||||  ||||||| |||||| |||||    
T  13851782 tataattacactgaattacgttattttctcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgttcaatgtccgtgtccgaacccgtg 13851688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 16766738 - 16766652
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatcc 161  Q
    |||||||||||||| | ||||| | ||||| ||||  ||||||||||||| ||||||  ||| ||| |||||||||| |||| ||||    
T  16766738 ttacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgtatcc 16766652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 19040398 - 19040344
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtc 124  Q
    |||| |||||||||||||| | ||||||| ||||| |||| ||||||||||||||    
T  19040398 tataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtc 19040344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 7265606 - 7265667
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 131  Q
    |||| |||||||||||||| | ||||||| ||||| |||| ||||| |||||||| ||||||    
T  7265606 tataattacactgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtcc 7265667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 8389485 - 8389530
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgt 115  Q
    |||| |||||||||||||||| ||||||||||||| ||||| ||||    
T  8389485 tataattacactgaattatatgattttcttaaattattagtagtgt 8389530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 164
Target Start/End: Original strand, 8776991 - 8777080
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtg 164  Q
    |||||||||||| | | ||||| | ||||| ||||| ||||||||||||| ||||||  ||| ||| || ||||||| |||| |||||||    
T  8776991 ttacactgaattttgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccgttgtccgtgtccgtatccgtg 8777080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 12696365 - 12696285
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccg 156  Q
    |||||||||||||| ||||||| | ||||| ||||  ||||||||||||| ||||||  ||| || || |||||||||||||    
T  12696365 ttacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtg-tccgtgtccgtatccg 12696285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 23771619 - 23771555
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgt 140  Q
    |||||||||| ||||||||||| ||||||| |||   ||||||||||||||||||||  |||||||    
T  23771619 ttacactgaagtatataatttt-ttaaattattaactgtgtcggcgtgtccgtgtccgtgtcatgt 23771555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 34595175 - 34595099
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgt 151  Q
    |||||||||||||| | ||||| | ||||| ||||| |||||||||||||  |||||  ||| ||| ||||||||||    
T  34595175 ttacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 34595099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 10572607 - 10572688
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccg 156  Q
    |||||| ||||||| | ||||||| ||||| ||||||||||||||||||| |||| |  ||| ||| |||||||||||||||    
T  10572607 ttacaccgaattatgtgattttctcaaattattagtggtgtcggcgtgtcagtgttcatgtcgtgtccggtgtccgtatccg 10572688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 398778 - 398872
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccgaatccgtg 164  Q
    |||| |||||||||||||| | ||||| | ||||| |||| |||||||||||||| ||||||  ||| ||| |||||||||  |||| |||||||    
T  398778 tataattacactgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgcgtccgtatccgtg 398872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 609482 - 609530
Alignment:
Q  81 tgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgt 129  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||| ||||    
T  609482 tgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgt 609530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 5376518 - 5376566
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgt 123  Q
    |||||||||||||| | ||||||||||||| |||| |||||||||||||    
T  5376518 ttacactgaattatgttattttcttaaattattagcggtgtcggcgtgt 5376566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 36878507 - 36878447
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 130  Q
    |||| |||||||||||||| | ||||||| ||||| |||| |||||||||||||| |||||    
T  36878507 tataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 36878447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 2896140 - 2896195
Alignment:
Q  76 tacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 131  Q
    ||||||||||||| | ||||||| ||||| |||| |||||||||||||| ||||||    
T  2896140 tacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtcc 2896195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 34298483 - 34298428
Alignment:
Q  69 gtatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtc 124  Q
    ||||| |||||||||||||| | ||||||| ||||| ||||||||||||| |||||    
T  34298483 gtataattacactgaattatgtgattttctcaaattattagtggtgtcggtgtgtc 34298428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 39130780 - 39130866
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgtatccg 156  Q
    |||| ||||||| |||||||||||||||| ||||| ||| | ||||| |||||||  | |||  ||| ||| |||||||||||||||    
T  39130780 tataattacactaaattatataattttctaaaattattaatagtgtcagcgtgtcaatatccatgtcgtgtccggtgtccgtatccg 39130866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 9828085 - 9828036
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtc 124  Q
    |||||||||||||| | ||||| | ||||| |||||||||||||||||||    
T  9828085 ttacactgaattatgtgattttatcaaattattagtggtgtcggcgtgtc 9828036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 15641043 - 15641124
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgt 151  Q
    |||| ||||||||||| || | ||||||||||||| ||||  |||||||| |||| ||||||  ||||||| || |||||||    
T  15641043 tatagttacactgaatcatgtgattttcttaaattattagcagtgtcggcatgtcagtgtccgtgtcatgtccgatgtccgt 15641124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 12443478 - 12443530
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgt 127  Q
    |||||||||||||| | ||||||| ||||| ||||  ||||||||||||||||    
T  12443478 ttacactgaattatgtgattttctcaaattattagctgtgtcggcgtgtccgt 12443530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 13436504 - 13436444
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 130  Q
    |||| |||||||||||||| | |||| |||||||| ||||  |||||||||||| ||||||    
T  13436504 tataattacactgaattatgtgatttccttaaattattagcagtgtcggcgtgttcgtgtc 13436444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 39953164 - 39953220
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 131  Q
    ||||||| |||||| | ||||||| ||||| |||| ||||||||||| |||||||||    
T  39953164 ttacactaaattatgtgattttctaaaattattagcggtgtcggcgtttccgtgtcc 39953220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 92848 - 92792
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 131  Q
    |||||||||||||| ||||||||| ||||| |||| |||||||||||||| ||||||    
T  92848 ttacactgaattatgtaattttctcaaattattagcggtgtcggcgtgtcagtgtcc 92792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 84986 - 85045
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgt 129  Q
    |||| ||||||  |||||||| |||||||||||||  |||||||||||||||||||||||    
T  84986 tataattacacataattatatgattttcttaaattagtagtggtgtcggcgtgtccgtgt 85045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 36635370 - 36635292
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtc 148  Q
    |||| |||||||||||||| | ||||||| ||||| |||||||||| |||||||| ||||||  ||| ||| |||||||    
T  36635370 tataattacactgaattatgtgattttctcaaattattagtggtgttggcgtgtcagtgtccgagtcgtgtccggtgtc 36635292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 21539875 - 21539940
Alignment:
Q  65 atatgtatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 130  Q
    |||| |||| ||||||| |||||||| ||||||||||||| ||| |||||||||| |||| |||||    
T  21539875 atatatataattacactaaattatatgattttcttaaattattaatggtgtcggcatgtcagtgtc 21539940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 22234908 - 22234965
Alignment:
Q  75 ttacactgaattatataattttctt-aaattgttagtggtgtcggcgtgtccgtgtcc 131  Q
    |||||||||||||| | ||||| || ||||| |||| |||||||||||||||||||||    
T  22234908 ttacactgaattatgtgatttttttcaaatttttagcggtgtcggcgtgtccgtgtcc 22234965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 24343553 - 24343472
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcccggtcatgttcggtgtccgt 151  Q
    |||| |||||||||||||| ||||||||| ||||| |||   ||||||||||||| | ||||  ||| ||| ||||||||||    
T  24343553 tataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtccgt 24343472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 17446112 - 17446068
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggc 119  Q
    ||||||| |||||| | ||||||||||||| ||||||||||||||    
T  17446112 ttacactaaattatgtgattttcttaaattattagtggtgtcggc 17446068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 56488528 - 56488584
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 131  Q
    |||| ||||||||||| ||||||| |||||||||| ||||||  |||||| ||||||    
T  56488528 ttaccctgaattatatgattttctcaaattgttagcggtgtcaacgtgtcggtgtcc 56488584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 90889 - 90829
Alignment:
Q  70 tatatttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtc 130  Q
    |||| |||||||||||||||| ||||||| ||||| ||| |||||| || ||||| |||||    
T  90889 tataattacactgaattatatgattttctcaaattattaatggtgttggtgtgtcagtgtc 90829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 192267 - 192323
Alignment:
Q  75 ttacactgaattatataattttcttaaattgttagtggtgtcggcgtgtccgtgtcc 131  Q
    |||||| ||||||| ||||||||| ||||| |||  |||||||||||||| ||||||    
T  192267 ttacaccgaattatgtaattttctcaaattattaacggtgtcggcgtgtcagtgtcc 192323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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