View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1200_low_32 (Length: 269)

Name: NF1200_low_32
Description: NF1200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1200_low_32
NF1200_low_32
[»] chr2 (9 HSPs)
chr2 (20-259)||(4142786-4143031)
chr2 (137-198)||(21616747-21616808)
chr2 (112-193)||(16069272-16069352)
chr2 (138-184)||(1239687-1239733)
chr2 (144-198)||(19573970-19574024)
chr2 (152-198)||(31456654-31456700)
chr2 (114-193)||(19536415-19536495)
chr2 (137-193)||(21091708-21091764)
chr2 (138-198)||(31808063-31808123)
[»] chr7 (15 HSPs)
chr7 (112-193)||(27945001-27945082)
chr7 (104-191)||(21141002-21141089)
chr7 (138-203)||(5235972-5236037)
chr7 (138-198)||(22868028-22868088)
chr7 (137-193)||(32308105-32308161)
chr7 (137-188)||(11722121-11722172)
chr7 (106-193)||(24339596-24339683)
chr7 (147-189)||(7758317-7758359)
chr7 (138-198)||(3554519-3554579)
chr7 (138-198)||(5835233-5835293)
chr7 (138-198)||(6630925-6630985)
chr7 (137-193)||(13770676-13770732)
chr7 (138-198)||(22484011-22484071)
chr7 (145-193)||(28155563-28155611)
chr7 (145-193)||(29787387-29787435)
[»] chr5 (11 HSPs)
chr5 (104-192)||(6770495-6770583)
chr5 (137-193)||(15410466-15410522)
chr5 (141-193)||(34879339-34879391)
chr5 (146-193)||(27932229-27932276)
chr5 (112-198)||(22013374-22013460)
chr5 (104-193)||(21522702-21522791)
chr5 (104-193)||(21533268-21533357)
chr5 (138-198)||(6035469-6035528)
chr5 (137-193)||(6326315-6326371)
chr5 (138-198)||(12927640-12927700)
chr5 (112-176)||(19820429-19820493)
[»] chr3 (12 HSPs)
chr3 (104-193)||(16000034-16000123)
chr3 (113-192)||(4466619-4466698)
chr3 (101-193)||(4990985-4991077)
chr3 (144-198)||(8039848-8039902)
chr3 (144-198)||(8383249-8383303)
chr3 (137-198)||(18426934-18426995)
chr3 (143-198)||(12703998-12704053)
chr3 (139-193)||(9800027-9800081)
chr3 (137-191)||(23870579-23870633)
chr3 (137-198)||(29112293-29112354)
chr3 (137-193)||(2620071-2620127)
chr3 (138-198)||(35222924-35222984)
[»] chr8 (8 HSPs)
chr8 (146-198)||(14634154-14634206)
chr8 (138-198)||(4786351-4786411)
chr8 (147-198)||(7658458-7658509)
chr8 (112-198)||(24362215-24362301)
chr8 (137-198)||(34897070-34897131)
chr8 (138-198)||(13844609-13844669)
chr8 (138-198)||(14134685-14134745)
chr8 (138-198)||(39954292-39954352)
[»] scaffold0306 (1 HSPs)
scaffold0306 (112-190)||(13360-13438)
[»] scaffold0152 (1 HSPs)
scaffold0152 (112-190)||(21889-21967)
[»] chr6 (17 HSPs)
chr6 (137-198)||(9658864-9658925)
chr6 (104-198)||(7938068-7938162)
chr6 (117-198)||(2153900-2153981)
chr6 (113-198)||(3398580-3398664)
chr6 (114-198)||(7996391-7996475)
chr6 (114-198)||(8022326-8022410)
chr6 (139-198)||(26562676-26562735)
chr6 (150-188)||(322517-322555)
chr6 (104-198)||(13851688-13851782)
chr6 (107-193)||(16766652-16766738)
chr6 (144-198)||(19040344-19040398)
chr6 (137-198)||(7265606-7265667)
chr6 (153-198)||(8389485-8389530)
chr6 (104-193)||(8776991-8777080)
chr6 (112-193)||(12696285-12696365)
chr6 (128-193)||(23771555-23771619)
chr6 (117-193)||(34595099-34595175)
[»] chr1 (13 HSPs)
chr1 (112-193)||(10572607-10572688)
chr1 (104-198)||(398778-398872)
chr1 (139-187)||(609482-609530)
chr1 (145-193)||(5376518-5376566)
chr1 (138-198)||(36878447-36878507)
chr1 (137-192)||(2896140-2896195)
chr1 (144-199)||(34298428-34298483)
chr1 (112-198)||(39130780-39130866)
chr1 (144-193)||(9828036-9828085)
chr1 (117-198)||(15641043-15641124)
chr1 (141-193)||(12443478-12443530)
chr1 (138-198)||(13436444-13436504)
chr1 (137-193)||(39953164-39953220)
[»] scaffold0004 (1 HSPs)
scaffold0004 (137-193)||(92792-92848)
[»] scaffold0039 (1 HSPs)
scaffold0039 (139-198)||(84986-85045)
[»] chr4 (6 HSPs)
chr4 (120-198)||(36635292-36635370)
chr4 (138-203)||(21539875-21539940)
chr4 (137-193)||(22234908-22234965)
chr4 (117-198)||(24343472-24343553)
chr4 (149-193)||(17446068-17446112)
chr4 (137-193)||(56488528-56488584)
[»] scaffold0022 (1 HSPs)
scaffold0022 (138-198)||(90829-90889)
[»] scaffold0018 (1 HSPs)
scaffold0018 (137-193)||(192267-192323)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 4143031 - 4142786
Alignment:
Q  20 aaactggaccttatttcctaaacataagactcattgatgtcctattttaatgtctaccttgataactagatctaatcaataaaacacggattcggatacg 119  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  4143031 aaactggaccttatttcctaaacataagactcattgatatcctattttaatgtctacattgataattagatctagtcaataaaacacggattcggatacg 4142932  T
Q  120 gacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaatt------atataattcagtgtaaatatacatataaatgttgga 213  Q
    ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||| |   ||  |||    
T  4142931 gacaccgaacacgacccggacactgacacgccgacaccactaacaatttaagaaaattatatttatataattcagtgtaaatatacatgttggtgacgga 4142832  T
Q  214 cgtgaagcatggctaatgcttcatagtaacactgtttagaataatc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  4142831 cgtgaagcatggctaatgcttcatagtaacactgtttagaataatc 4142786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 21616747 - 21616808
Alignment:
Q  137 ggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||||||||||||||||||| |||| ||||| ||||||| | |||||||||||||| ||||    
T  21616747 ggacacggacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattata 21616808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 193
Target Start/End: Complemental strand, 16069352 - 16069272
Alignment:
Q  112 cggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    ||||||||||||| ||  |||||  |||||| ||||||||||||||  ||| ||||||| ||||| ||||||||||||||||    
T  16069352 cggatacggacacagat-atgacacggacactgacacgccgacaccgttaataatttaaaaaaatcatataattcagtgtaa 16069272  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 1239733 - 1239687
Alignment:
Q  138 gacacggacacgccgacaccactaacaatttaagaaaattatataat 184  Q
    |||||||||||||||||| || ||| ||||||||||||| |||||||    
T  1239733 gacacggacacgccgacatcattaataatttaagaaaatcatataat 1239687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 19573970 - 19574024
Alignment:
Q  144 gacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||||||||||||  ||| ||||||||||||| | |||||||||||||| ||||    
T  19573970 gacacgccgacaccgataataatttaagaaaataacataattcagtgtaattata 19574024  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 31456700 - 31456654
Alignment:
Q  152 gacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    |||||| |||| |||||||||||||||| ||||||||||||| ||||    
T  31456700 gacaccgctaataatttaagaaaattatgtaattcagtgtaattata 31456654  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 19536495 - 19536415
Alignment:
Q  114 gatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaattt-aagaaaattatataattcagtgtaa 193  Q
    ||||||||||||| ||| |||  |||||  ||||||||||||| ||||| ||||| || ||||| | ||||||||||||||    
T  19536495 gatacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaaatcacataattcagtgtaa 19536415  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 21091708 - 21091764
Alignment:
Q  137 ggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    |||||| ||||| |||||||| |||| ||||||||||||| | ||| ||||||||||    
T  21091708 ggacactgacacaccgacaccgctaataatttaagaaaataacatacttcagtgtaa 21091764  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 31808063 - 31808123
Alignment:
Q  138 gacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||| ||||| |||||||| |||| ||||||| ||||| | |||||||||||||| ||||    
T  31808063 gacactgacacaccgacaccgctaataatttaacaaaatcacataattcagtgtaattata 31808123  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 193
Target Start/End: Original strand, 27945001 - 27945082
Alignment:
Q  112 cggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    ||||||||||||||| ||| |||  |||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  27945001 cggatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaattacataattcagtgtaa 27945082  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 21141089 - 21141002
Alignment:
Q  104 cacggattcggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgt 191  Q
    ||||||| |||| |||||||||| ||| |||  |||| | |||||| |||||||||||| ||||||||||||| ||||||||||||||    
T  21141089 cacggatacggacacggacaccgtacacgacacggacgccgacacgtcgacaccactaataatttaagaaaatcatataattcagtgt 21141002  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 5235972 - 5236037
Alignment:
Q  138 gacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatatacatat 203  Q
    ||||| |||||| ||||||| |||| |||||||||||||||||||||| ||||||| |||| ||||    
T  5235972 gacactgacacgtcgacaccgctaataatttaagaaaattatataatttagtgtaattatatatat 5236037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 22868028 - 22868088
Alignment:
Q  138 gacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||| ||||||||||||||||||| ||| | ||||||| | |||||||||||||| ||||    
T  22868028 gacactgacacgccgacaccactaataatatgagaaaatcacataattcagtgtaattata 22868088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 32308105 - 32308161
Alignment:
Q  137 ggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    |||||| |||||||||||||| |||| ||||| ||||||| | ||||||||||||||    
T  32308105 ggacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaa 32308161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 11722172 - 11722121
Alignment:
Q  137 ggacacggacacgccgacaccactaacaatttaagaaaattatataattcag 188  Q
    |||||| |||||||||||||| |||||||||| ||||||| | |||||||||    
T  11722172 ggacactgacacgccgacaccgctaacaatttgagaaaatcacataattcag 11722121  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 24339596 - 24339683
Alignment:
Q  106 cggattcggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    ||||| ||||||||||||||| ||| |||  |||||  |||||||||||||  |||| ||||| | ||||| | ||||||||||||||    
T  24339596 cggatacggatacggacaccggacacgacatggacattgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaa 24339683  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 7758317 - 7758359
Alignment:
Q  147 acgccgacaccactaacaatttaagaaaattatataattcagt 189  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||    
T  7758317 acgctgacaccactaataattttagaaaattatataattcagt 7758359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 3554579 - 3554519
Alignment:
Q  138 gacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||| ||||||||||||||| | | ||||||||||||||| |||||| | ||||| ||||    
T  3554579 gacacagacacgccgacaccaatgataatttaagaaaattacataatttaatgtaattata 3554519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 5835233 - 5835293
Alignment:
Q  138 gacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||| || |||||||||||||||| | ||| ||||||| | |||||||||||||| ||||    
T  5835233 gacactgatacgccgacaccactaatagtttgagaaaataacataattcagtgtaattata 5835293  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 6630985 - 6630925
Alignment:
Q  138 gacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||| ||||||||||||||||||| ||||| ||||| | |  ||||||||||||| ||||    
T  6630985 gacactgacacgccgacaccactaataatttgagaaagtcacttaattcagtgtaattata 6630925  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 13770676 - 13770732
Alignment:
Q  137 ggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    |||||| || ||||||||||  |||| ||||||| ||||||| ||||||||||||||    
T  13770676 ggacactgatacgccgacacagctaataatttaaaaaaattacataattcagtgtaa 13770732  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 22484011 - 22484071
Alignment:
Q  138 gacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||| |||||||||||||| |||| ||||| ||||||||  |||||||||| ||| ||||    
T  22484011 gacactgacacgccgacaccgctaataattttagaaaattgcataattcagtataattata 22484071  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 28155563 - 28155611
Alignment:
Q  145 acacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    ||||||||||||| |||| ||||| ||||||||| ||||||| ||||||    
T  28155563 acacgccgacaccgctaataatttgagaaaattacataattcggtgtaa 28155611  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 29787435 - 29787387
Alignment:
Q  145 acacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    ||||||||||||| |||| ||||| ||||||| | ||||||||||||||    
T  29787435 acacgccgacaccgctaataatttgagaaaatcacataattcagtgtaa 29787387  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 6770495 - 6770583
Alignment:
Q  104 cacggattcggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgta 192  Q
    ||||||| |||||||||||||||||||||||  |||||| ||||| | ||||| ||||| ||||||||||||| | |||||||||||||    
T  6770495 cacggatacggatacggacaccgaacatgacacggacactgacacactgacacaactaataatttaagaaaatcacataattcagtgta 6770583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 15410522 - 15410466
Alignment:
Q  137 ggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    |||||| |||||||||||||| |||| |||||||||||||||||| |||||||||||    
T  15410522 ggacactgacacgccgacaccgctaataatttaagaaaattatatgattcagtgtaa 15410466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 34879339 - 34879391
Alignment:
Q  141 acggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    |||||||||||| |||| |||| ||||| ||||||| ||||||||||||||||    
T  34879339 acggacacgccggcaccgctaaaaatttgagaaaatcatataattcagtgtaa 34879391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 27932229 - 27932276
Alignment:
Q  146 cacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    |||||||||||| |||| ||||| ||||||||| ||||||||||||||    
T  27932229 cacgccgacaccgctaataatttgagaaaattacataattcagtgtaa 27932276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 198
Target Start/End: Original strand, 22013374 - 22013460
Alignment:
Q  112 cggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||||||||||||| ||| |||  |||||| |||||||||||||  |||| |||||   ||||||| |||||| ||||||| ||||    
T  22013374 cggatacggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaattacataatttagtgtaattata 22013460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 193
Target Start/End: Original strand, 21522702 - 21522791
Alignment:
Q  104 cacggattcggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    ||||||| |||| |||| ||||| ||| |||  |||||| |||||||||||||  |||| ||||| | ||||| | ||||||||||||||    
T  21522702 cacggatacggacacggtcaccggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaa 21522791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 193
Target Start/End: Original strand, 21533268 - 21533357
Alignment:
Q  104 cacggattcggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    ||||||| |||| |||| ||||| ||| |||  |||||| |||||||||||||  |||| ||||| | ||||| | ||||||||||||||    
T  21533268 cacggatacggacacggtcaccggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaa 21533357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 6035469 - 6035528
Alignment:
Q  138 gacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||| |||||||||||||| |||| ||||| || |||| |||||||||||||||| ||||    
T  6035469 gacactgacacgccgacaccgctaataatttgag-aaataatataattcagtgtaattata 6035528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 6326371 - 6326315
Alignment:
Q  137 ggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    |||||| |||||||||||| | |||  ||||| ||||||||| ||||||||||||||    
T  6326371 ggacactgacacgccgacatcgctagtaatttgagaaaattacataattcagtgtaa 6326315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 12927640 - 12927700
Alignment:
Q  138 gacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||||||||| |||||| | |||| ||||| ||||||| |||||||| ||||||| ||||    
T  12927640 gacacggacacaccgacatcgctaataatttgagaaaatcatataatttagtgtaattata 12927700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 19820493 - 19820429
Alignment:
Q  112 cggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaat 176  Q
    ||||||||||||||| ||| |||  |||||| ||||| |||||||| |||| ||||| |||||||    
T  19820493 cggatacggacaccggacacgacacggacactgacactccgacaccgctaataatttgagaaaat 19820429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 193
Target Start/End: Complemental strand, 16000123 - 16000034
Alignment:
Q  104 cacggattcggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    ||||||| |||| |||||||||||||| |||   ||||| ||||||||||||| ||||| ||||||| ||||| | ||||||||||||||    
T  16000123 cacggatacggacacggacaccgaacacgacacagacactgacacgccgacacaactaataatttaaaaaaataacataattcagtgtaa 16000034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 4466698 - 4466619
Alignment:
Q  113 ggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgta 192  Q
    |||||||||||||| |||||||  | |||| ||||| ||||||||  ||| ||||||||||||| |||||||||||||||    
T  4466698 ggatacggacaccggacatgacacgaacactgacactccgacaccggtaataatttaagaaaatcatataattcagtgta 4466619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 4991077 - 4990985
Alignment:
Q  101 aaacacggattcggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    ||||||| || |||| |||||||||||||| |||  ||| || ||||| |||||||| |||| | ||| ||||||||| ||||||||||||||    
T  4991077 aaacacgtatacggacacggacaccgaacacgacacggagactgacactccgacaccgctaatagtttgagaaaattacataattcagtgtaa 4990985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 8039902 - 8039848
Alignment:
Q  144 gacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    |||||||| ||||| |||| ||||| |||||||||||||||||||||||| ||||    
T  8039902 gacacgccaacaccgctaataatttgagaaaattatataattcagtgtaattata 8039848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 8383249 - 8383303
Alignment:
Q  144 gacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    |||||||||||||| |||| ||||| ||||||| |||||||||||||||| ||||    
T  8383249 gacacgccgacaccgctaataatttgagaaaatcatataattcagtgtaattata 8383303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 18426934 - 18426995
Alignment:
Q  137 ggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    |||||||||||||||||||||||||| ||||| | ||||| | ||||||| |||||| ||||    
T  18426934 ggacacggacacgccgacaccactaataatttcaaaaaatcacataattcggtgtaattata 18426995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 12703998 - 12704053
Alignment:
Q  143 ggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    |||||||||||||||||||| ||||| ||||||  | |||||||||||||| ||||    
T  12703998 ggacacgccgacaccactaataatttgagaaaagcacataattcagtgtaattata 12704053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 9800027 - 9800081
Alignment:
Q  139 acacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    |||| |||||||||||||| |||| ||||| ||||||||| ||||||| ||||||    
T  9800027 acactgacacgccgacacctctaataatttgagaaaattacataattccgtgtaa 9800081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 23870633 - 23870579
Alignment:
Q  137 ggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgt 191  Q
    ||||||||||||| ||||||| |||| ||||| | ||||| ||||||||||||||    
T  23870633 ggacacggacacgtcgacaccgctaataatttgaaaaaatcatataattcagtgt 23870579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 29112354 - 29112293
Alignment:
Q  137 ggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    |||||| ||||||  |||||||||||  |||| ||||||| |||||||||||||||| ||||    
T  29112354 ggacactgacacgttgacaccactaattatttgagaaaatcatataattcagtgtaattata 29112293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 2620127 - 2620071
Alignment:
Q  137 ggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    |||||| |||||||||||||||||||  |||| ||||||| | |||||| |||||||    
T  2620127 ggacactgacacgccgacaccactaatcatttgagaaaatcacataattaagtgtaa 2620071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 35222924 - 35222984
Alignment:
Q  138 gacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||| ||||||||||||| ||||||| ||| ||||||| | |||||||| ||||| ||||    
T  35222924 gacacagacacgccgacacaactaacatttttagaaaatcacataattcaatgtaattata 35222984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 14634206 - 14634154
Alignment:
Q  146 cacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  14634206 cacgtcgacaccgctaacaatttaagaaaattatataattcagtgtaattata 14634154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 4786411 - 4786351
Alignment:
Q  138 gacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||| ||||||||||||||| ||| ||||||||||||| | |||||||||||||| ||||    
T  4786411 gacactgacacgccgacaccattaataatttaagaaaatcacataattcagtgtaattata 4786351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 7658458 - 7658509
Alignment:
Q  147 acgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    |||||||||||||||| ||||| ||||||||| |||||||||||||| ||||    
T  7658458 acgccgacaccactaataatttgagaaaattacataattcagtgtaattata 7658509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 24362301 - 24362215
Alignment:
Q  112 cggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||||||||||||| | | |||   ||||| |||||||||||||| |||| ||||| ||| ||| | |||||||||||||| ||||    
T  24362301 cggatacggacaccggatacgacacagacaccgacacgccgacaccgctaataatttgagagaatcacataattcagtgtaattata 24362215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 34897070 - 34897131
Alignment:
Q  137 ggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    |||||| |||||| ||||||| |||| ||||| ||||||| | |||||||||||||| ||||    
T  34897070 ggacacagacacgtcgacaccgctaataatttgagaaaatcacataattcagtgtaattata 34897131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 13844669 - 13844609
Alignment:
Q  138 gacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    |||||||||||||||||||  |||| ||||| ||||||| | |||||| ||||||| ||||    
T  13844669 gacacggacacgccgacactgctaataatttgagaaaatcacataattgagtgtaattata 13844609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 14134685 - 14134745
Alignment:
Q  138 gacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    |||||||||||| |||||  ||||| ||||| ||||||| | |||||||||||||| ||||    
T  14134685 gacacggacacgtcgacaatactaataatttgagaaaatcacataattcagtgtaattata 14134745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 39954352 - 39954292
Alignment:
Q  138 gacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||| |||||||||||||| |||| ||||| ||||||| | |||||| ||||||| ||||    
T  39954352 gacaccgacacgccgacaccgctaataatttgagaaaatcacataatttagtgtaattata 39954292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 13360 - 13438
Alignment:
Q  112 cggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtg 190  Q
    ||||||||||||||| | |||||  |||||| ||||||||||||| ||||| ||||| ||||||| | |||||||||||    
T  13360 cggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatcacataattcagtg 13438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 21967 - 21889
Alignment:
Q  112 cggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtg 190  Q
    ||||||||||||||| | |||||  |||||| ||||||||||||| ||||| ||||| ||||||| | |||||||||||    
T  21967 cggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatcacataattcagtg 21889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 9658864 - 9658925
Alignment:
Q  137 ggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    |||||| |||||||||||||| |||| ||||||||||||| | |||||||||||||| ||||    
T  9658864 ggacactgacacgccgacaccgctaataatttaagaaaatcacataattcagtgtaattata 9658925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 7938068 - 7938162
Alignment:
Q  104 cacggattcggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||||| |||| |||||||||| ||| |||  |||||| |||||||||||||  |||| ||||| | ||||| |||||||| ||||||| ||||    
T  7938068 cacggatacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattata 7938162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 2153981 - 2153900
Alignment:
Q  117 acggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||||| || |||||||  |||||| ||||||||||||| |  || ||||||||||||| |||||||| ||||||| ||||    
T  2153981 acggacatcggacatgacacggacaccgacacgccgacacgaacaataatttaagaaaatgatataatttagtgtaattata 2153900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 3398580 - 3398664
Alignment:
Q  113 ggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||||||||| |||||| |||  |||||| |||||||||||||  |||| ||||| | ||||| |||||||||||||||| ||||    
T  3398580 ggatacggacatcgaacacgacacggacactgacacgccgacacagctaataatttga-aaaatcatataattcagtgtaattata 3398664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 7996475 - 7996391
Alignment:
Q  114 gatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||| ||||| | |||||||  |||||| |||| ||||||||  |||| ||||| ||||||| |||||||||||||||| ||||    
T  7996475 gatacagacacagtacatgacaaggacactgacatgccgacactgctaataatttgagaaaatcatataattcagtgtaattata 7996391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 8022326 - 8022410
Alignment:
Q  114 gatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||| ||||| | |||||||  |||||| |||| ||||||||  |||| ||||| ||||||| |||||||||||||||| ||||    
T  8022326 gatacagacacagtacatgacaaggacactgacatgccgacactgctaataatttgagaaaatcatataattcagtgtaattata 8022410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 26562676 - 26562735
Alignment:
Q  139 acacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||||||||||||||||  |||| ||||| ||||||| | |||||||||||||| ||||    
T  26562676 acacggacacgccgacactgctaaaaatttgagaaaatcacataattcagtgtaattata 26562735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 322517 - 322555
Alignment:
Q  150 ccgacaccactaacaatttaagaaaattatataattcag 188  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  322517 ccgacaccactaataatttaagaaaattacataattcag 322555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 13851688 - 13851782
Alignment:
Q  104 cacggattcggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||| |||||| |||||||  ||||| |||  |||||| |||||| ||||||| |||| ||||| ||||||| |  ||||||||||||| ||||    
T  13851688 cacgggttcggacacggacattgaacacgacacggacactgacacgtcgacaccgctaataatttgagaaaataacgtaattcagtgtaattata 13851782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 16766652 - 16766738
Alignment:
Q  107 ggattcggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    |||| |||| |||||||||| ||| |||  |||||| |||||||||||||  |||| ||||| | ||||| | ||||||||||||||    
T  16766652 ggatacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaa 16766738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 19040344 - 19040398
Alignment:
Q  144 gacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    |||||||||||||| |||| ||||| ||||||| | |||||||||||||| ||||    
T  19040344 gacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattata 19040398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 7265667 - 7265606
Alignment:
Q  137 ggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    |||||| |||||||| ||||| |||| ||||| ||||||| | |||||||||||||| ||||    
T  7265667 ggacactgacacgccaacaccgctaataatttgagaaaatcacataattcagtgtaattata 7265606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 8389530 - 8389485
Alignment:
Q  153 acaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    |||| ||||| ||||||||||||| |||||||||||||||| ||||    
T  8389530 acactactaataatttaagaaaatcatataattcagtgtaattata 8389485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 193
Target Start/End: Complemental strand, 8777080 - 8776991
Alignment:
Q  104 cacggattcggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    ||||||| |||| ||||||| || ||| |||  |||||| ||||||||||||| ||||| ||||| | ||||| | | ||||||||||||    
T  8777080 cacggatacggacacggacaacggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatcacaaaattcagtgtaa 8776991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 193
Target Start/End: Original strand, 12696285 - 12696365
Alignment:
Q  112 cggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    ||||||||||||| || || |||  |||||| |||||||||||||  |||| ||||| | ||||||| ||||||||||||||    
T  12696285 cggatacggacacgga-cacgacacggacactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaa 12696365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 23771555 - 23771619
Alignment:
Q  128 acatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    |||||||  ||||||||||||||||||||   ||| ||||||| ||||||||||| ||||||||||    
T  23771555 acatgacacggacacggacacgccgacacagttaataatttaa-aaaattatatacttcagtgtaa 23771619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 34595099 - 34595175
Alignment:
Q  117 acggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    |||||||||| ||| |||  |||||  ||||||||||||| ||||| ||||| | ||||| | ||||||||||||||    
T  34595099 acggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaa 34595175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 193
Target Start/End: Complemental strand, 10572688 - 10572607
Alignment:
Q  112 cggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    ||||||||||||||| ||| |||  | |||| ||||||||||||||||||| ||||| ||||||| | ||||||| ||||||    
T  10572688 cggatacggacaccggacacgacatgaacactgacacgccgacaccactaataatttgagaaaatcacataattcggtgtaa 10572607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 398872 - 398778
Alignment:
Q  104 cacggattcggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||||| ||||  ||||||||| ||| |||  |||||| |||||||||||||| |||| ||||| | ||||| | |||||||||||||| ||||    
T  398872 cacggatacggacgcggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaattata 398778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 609530 - 609482
Alignment:
Q  139 acacggacacgccgacaccactaacaatttaagaaaattatataattca 187  Q
    |||| ||||||||||||||||||| ||||| ||||||||| ||||||||    
T  609530 acactgacacgccgacaccactaataatttgagaaaattacataattca 609482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 5376566 - 5376518
Alignment:
Q  145 acacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    ||||||||||||| |||| ||||||||||||| | ||||||||||||||    
T  5376566 acacgccgacaccgctaataatttaagaaaataacataattcagtgtaa 5376518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 36878447 - 36878507
Alignment:
Q  138 gacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||| |||||||||||||| |||| ||||| ||||||| | |||||||||||||| ||||    
T  36878447 gacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattata 36878507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 2896195 - 2896140
Alignment:
Q  137 ggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgta 192  Q
    |||||| |||||||||||||| |||| ||||| ||||||| | |||||||||||||    
T  2896195 ggacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgta 2896140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 34298428 - 34298483
Alignment:
Q  144 gacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatatac 199  Q
    ||||| ||||||||||||| ||||| ||||||| | |||||||||||||| |||||    
T  34298428 gacacaccgacaccactaataatttgagaaaatcacataattcagtgtaattatac 34298483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 39130866 - 39130780
Alignment:
Q  112 cggatacggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||||||||||||| ||| |||  ||| |  ||||||| ||||| | ||| ||||| |||||||||||||||| ||||||| ||||    
T  39130866 cggatacggacaccggacacgacatggatattgacacgctgacactattaataattttagaaaattatataatttagtgtaattata 39130780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 9828036 - 9828085
Alignment:
Q  144 gacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    ||||||||||||||||||| ||||| | ||||| | ||||||||||||||    
T  9828036 gacacgccgacaccactaataatttgataaaatcacataattcagtgtaa 9828085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 15641124 - 15641043
Alignment:
Q  117 acggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||||| || |||||||  |||||| |||| ||||||||  |||| ||||||||||||| | || ||||||||||| ||||    
T  15641124 acggacatcggacatgacacggacactgacatgccgacactgctaataatttaagaaaatcacatgattcagtgtaactata 15641043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 12443530 - 12443478
Alignment:
Q  141 acggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    ||||||||||||||||  |||| ||||| ||||||| | ||||||||||||||    
T  12443530 acggacacgccgacacagctaataatttgagaaaatcacataattcagtgtaa 12443478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 13436444 - 13436504
Alignment:
Q  138 gacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    |||||| ||||||||||||  |||| |||||||| |||| | |||||||||||||| ||||    
T  13436444 gacacgaacacgccgacactgctaataatttaaggaaatcacataattcagtgtaattata 13436504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 39953220 - 39953164
Alignment:
Q  137 ggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    ||||||||| ||||||||||| |||| ||||| ||||||| | |||||| |||||||    
T  39953220 ggacacggaaacgccgacaccgctaataattttagaaaatcacataatttagtgtaa 39953164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 92792 - 92848
Alignment:
Q  137 ggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    |||||| |||||||||||||| |||| ||||| ||||||||| ||||||||||||||    
T  92792 ggacactgacacgccgacaccgctaataatttgagaaaattacataattcagtgtaa 92848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 85045 - 84986
Alignment:
Q  139 acacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||||  |||||| ||||    
T  85045 acacggacacgccgacaccactactaatttaagaaaatcatataattatgtgtaattata 84986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 36635292 - 36635370
Alignment:
Q  120 gacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||||| ||| |||  |||||| |||||||| |||||||||| ||||| ||||||| | |||||||||||||| ||||    
T  36635292 gacaccggacacgactcggacactgacacgccaacaccactaataatttgagaaaatcacataattcagtgtaattata 36635370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 21539940 - 21539875
Alignment:
Q  138 gacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatatacatat 203  Q
    ||||| |||| |||||||||| ||| ||||||||||||| |||||||| ||||||| |||| ||||    
T  21539940 gacactgacatgccgacaccattaataatttaagaaaatcatataatttagtgtaattatatatat 21539875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 22234965 - 22234908
Alignment:
Q  137 ggacacggacacgccgacaccactaacaattt-aagaaaattatataattcagtgtaa 193  Q
    ||||||||||||||||||||| |||| ||||| || ||||| | ||||||||||||||    
T  22234965 ggacacggacacgccgacaccgctaaaaatttgaaaaaaatcacataattcagtgtaa 22234908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 24343472 - 24343553
Alignment:
Q  117 acggacaccgaacatgaccgggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    |||||||||| ||| |||  |||| | |||||||||||||   ||| ||||| ||||||||| |||||||||||||| ||||    
T  24343472 acggacaccggacacgacacggacgccgacacgccgacacggataataatttgagaaaattacataattcagtgtaattata 24343553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 17446068 - 17446112
Alignment:
Q  149 gccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    |||||||||||||| ||||||||||||| | |||||| |||||||    
T  17446068 gccgacaccactaataatttaagaaaatcacataatttagtgtaa 17446112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 56488584 - 56488528
Alignment:
Q  137 ggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    |||||| ||||||  |||||| |||||||||| ||||||| ||||||||||| ||||    
T  56488584 ggacaccgacacgttgacaccgctaacaatttgagaaaatcatataattcagggtaa 56488528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 90829 - 90889
Alignment:
Q  138 gacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaaatata 198  Q
    ||||| ||||| || |||||| ||| ||||| ||||||| |||||||||||||||| ||||    
T  90829 gacactgacacaccaacaccattaataatttgagaaaatcatataattcagtgtaattata 90889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 192323 - 192267
Alignment:
Q  137 ggacacggacacgccgacaccactaacaatttaagaaaattatataattcagtgtaa 193  Q
    |||||| ||||||||||||||  ||| ||||| ||||||||| ||||||| ||||||    
T  192323 ggacactgacacgccgacaccgttaataatttgagaaaattacataattcggtgtaa 192267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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