View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1200_low_36 (Length: 251)
Name: NF1200_low_36
Description: NF1200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1200_low_36 |
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| [»] scaffold0608 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 46926327 - 46926565
Alignment:
| Q |
1 |
caggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaagtcattggccaagctagcaaaaattcatggccctttaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46926327 |
caggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaagtcattggccaagctagcgaaaattcatggccctttaat |
46926426 |
T |
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| Q |
101 |
gagtctcaagtttggccaaataaccactattgttatctcctcagcaacaatggctaaagaggttctcctaaccaatgacaagttcttgtcaaagagaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46926427 |
gagtctcaagtttggccaaataaccactattgttatctcctcagcaacaatggctaaagaggttctcctaaccaatgacaagttcttgtcaaagagaaac |
46926526 |
T |
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| Q |
201 |
atacctcaaactgtgtcagttctcaaccatgagcagtat |
239 |
Q |
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| T |
46926527 |
atacctcaaactgtgtcagttctcaaccatgagcagtat |
46926565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 11107731 - 11107500
Alignment:
| Q |
1 |
caggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaagtcattggccaagctagcaaaaattcatggccctttaat |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||| || ||||| |||||||| || || || ||||| |||| |||||||| |
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| T |
11107731 |
caggaccttcccctcttcccatcatagggaacctccttgaattaggacaaaagccccacaaatcattggctaaacttgccaaaatatatggtcctttaat |
11107632 |
T |
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| Q |
101 |
gagtctcaagtttggccaaataaccactattgttatctcctcagcaacaatggctaaagaggttctcctaaccaatgacaagttcttgtcaaagagaaac |
200 |
Q |
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| T |
11107631 |
gagtctcaagctagggcaaataaccactgttgttatctcttcatcaacaatggccaaacaagttcttctcaccaatgacaaattcttgtcaaataggact |
11107532 |
T |
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| Q |
201 |
atacctcaaactgtgtcagttctcaaccatga |
232 |
Q |
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| T |
11107531 |
gttccacaatctgtgtcagttctcaaccatga |
11107500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 46933192 - 46933426
Alignment:
| Q |
1 |
caggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaagtcattggccaagctagcaaaaattcatggccctttaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| || |||| |||||||| || |||| |
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| T |
46933192 |
caggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatcttacaaagattcatggttctataat |
46933291 |
T |
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| Q |
101 |
gagtctcaagtttggccaaataaccactattgttatctcctcagcaacaatggctaaagaggttctcctaaccaatgacaagttcttgtcaaagagaaac |
200 |
Q |
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|||||||||||||||| |||||||||| | || |||||||||| | ||||| || ||||| || || ||||||||| |||||||||| || |||| | |
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| T |
46933292 |
aagtctcaagtttggccgaataaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttctgaccaatgaccagttcttgtctaatagaacc |
46933391 |
T |
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| Q |
201 |
atacctcaaactgtgtcagttctcaaccatgagca |
235 |
Q |
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|| || ||| ||||||| ||||||||||| ||||| |
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| T |
46933392 |
attccacaatctgtgtcggttctcaaccacgagca |
46933426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 3170 - 2939
Alignment:
| Q |
1 |
caggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaagtcattggccaagctagcaaaaattcatggccctttaat |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||| || ||||| |||||||| || || || ||||| |||| |||||||| |
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| T |
3170 |
caggaccttcccctcttcccatcatagggaacctccttgaattaggacaaaagccccacaaatcattggctaaacttgccaaaatatatggtcctttaat |
3071 |
T |
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| Q |
101 |
gagtctcaagtttggccaaataaccactattgttatctcctcagcaacaatggctaaagaggttctcctaaccaatgacaagttcttgtcaaagagaaac |
200 |
Q |
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|||||||||| | || |||||||||||| |||||||||| ||| |||||||||| ||| | ||||| || ||||||||||| ||||||||||| || | |
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| T |
3070 |
gagtctcaagctagggcaaataaccactgttgttatctcttcatcaacaatggccaaacaagttcttctcaccaatgacaaattcttgtcaaataggact |
2971 |
T |
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| Q |
201 |
atacctcaaactgtgtcagttctcaaccatga |
232 |
Q |
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| T |
2970 |
gttccacaatctgtgtcagttctcaaccatga |
2939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 29975448 - 29975388
Alignment:
| Q |
1 |
caggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaa |
61 |
Q |
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|||||||| | |||||||| ||||||| ||||||||| ||||||| ||||||||||||| |
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| T |
29975448 |
caggacctactcctcttcccttcataggaaacctccttcaattagggaaaaaacctcacaa |
29975388 |
T |
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