View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1200_low_38 (Length: 225)
Name: NF1200_low_38
Description: NF1200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1200_low_38 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 43561008 - 43560872
Alignment:
| Q |
1 |
caacctcacagcttagggtctatgatggttcattaaattattataggggtcctgttctgtctccaaatatctataataggtggttcaaggtgaacgttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43561008 |
caacctcacagcttagggtctatgatggttcattaaattattatagggatcctgttctgtctccaaatatctataataggtggttcaaggtgaacgttat |
43560909 |
T |
|
| Q |
101 |
tcataatgtgggtggtaacaatgttaaggtttatatt |
137 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43560908 |
tcataatgtgggtgctaacaatgttaaggtttatatt |
43560872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University