View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1200_low_8 (Length: 460)
Name: NF1200_low_8
Description: NF1200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1200_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 13 - 431
Target Start/End: Original strand, 17491902 - 17492320
Alignment:
| Q |
13 |
aatatccacattggaatcaaaataagagaattggcattgtagtttggaagtaaccagctagtatgaaagaatttaagcacaacatcaatgacctcttttt |
112 |
Q |
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| T |
17491902 |
aatatccaaattggaatcaaaataagagaattggcattgtagtttggaagtaaccagctagtatgaaagaatttaagcacaacatcaatgacctcttttt |
17492001 |
T |
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| Q |
113 |
gaacaatctcccaataggtatgaaagaagcaggcaccaaatccatcagggtcagggaatccatcactattcaagctaaacactacaaccttgatctcttc |
212 |
Q |
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| T |
17492002 |
gaacaatctcccaataggtatgaaagaagcaggcaccaaatccatcagggtcaggggatccatcactattcaagctaaacactacaaccttgatctcttc |
17492101 |
T |
|
| Q |
213 |
ttcactagaagaaaccatagtgagcagattgttagtatgatcttcaataagggttgggataacttcctccgcaagcaagaaatcatgcataacaaagtta |
312 |
Q |
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| T |
17492102 |
ttcactagaagaaaccatagtgagcagattgttagtatgatcttcaataagggttgggatgacttcctccgcaagcaagaaatcatgcataacaaagtta |
17492201 |
T |
|
| Q |
313 |
gaagaaaacaagttcctctaatattaacattccaacaatttgagatgagctgtttgcggtctttctggagagtccacatctttaaaaacttgaaagaaga |
412 |
Q |
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| T |
17492202 |
gtagaaaacaagttcctctaatattaacattccaacaatttgagatgagctgtttgcggtctttctggagagtccacatctttaaaaacttgaaagaaga |
17492301 |
T |
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| Q |
413 |
agcaaatgtgtggatatta |
431 |
Q |
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| T |
17492302 |
agcaaatgtgtggatatta |
17492320 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 17639043 - 17638853
Alignment:
| Q |
23 |
ttggaatcaaaataagagaattggcattgtagtttggaagtaaccagctagtatgaaagaatttaagcacaacatcaatgacctctttttgaacaatctc |
122 |
Q |
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||||||||||||| || || || ||||| || |||||||| ||||| ||| |||| ||||| | |||||||||||||| | |||||||||||||| |
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| T |
17639043 |
ttggaatcaaaatgagggagttagcattataatttggaagcaaccactcagtttgaatgaattcttgaacaacatcaatgacatttttttgaacaatctg |
17638944 |
T |
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| Q |
123 |
ccaataggtatgaaagaag-caggcaccaaatccatcagggtcagggaatccatcactattcaagctaaacactacaaccttgatctcttc |
212 |
Q |
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||| || || ||||| || ||||| ||||| ||||||||| ||||| ||||||| |||||| ||||||||| | | ||||||||||| |
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| T |
17638943 |
ccagtatgtgtgaaaaaaaacaggctccaaagccatcagggccaggggccccatcaccattcaaactaaacactgtagctttgatctcttc |
17638853 |
T |
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