View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12010_high_4 (Length: 234)
Name: NF12010_high_4
Description: NF12010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12010_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41947919 - 41948136
Alignment:
| Q |
1 |
tagtcacttttaattgtagaccaaaatctagtcatctttatagnnnnnnnattaagaatgcttcgattcatggaactcgacagtattttgtcatacatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41947919 |
tagtcacttttaattgtagaccaaaatctagtcatctt-atagtttttttattaagaatgcttcgattcatggaactcgacagtattttgtcatacatca |
41948017 |
T |
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| Q |
101 |
acatagtttaaaattttaaggcattatttaaaagtatagtttgtgaagnnnnnnnnnnaaagaagtgggatgtgcttgaatcacgggatagcttaatgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
41948018 |
acatagtttaaaattttaaggcattatttaaaagtatagtttgtgaagttttttttta----aagtgggatttgcttgaatcacgggatagcttaatgga |
41948113 |
T |
|
| Q |
201 |
ttgagtgggcaaaagtgaaaact |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
41948114 |
ttgagtgggcaaaagtgaaaact |
41948136 |
T |
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