View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12011_high_17 (Length: 273)
Name: NF12011_high_17
Description: NF12011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12011_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 10824904 - 10825153
Alignment:
| Q |
1 |
agaggcaaccattttgtcagaactcgtactgaatcctcgtctcgtcaagagtggccgaaccaatgacttcatcttcatcctgaacaaattcaaaaacatc |
100 |
Q |
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| T |
10824904 |
agaggcaaccattttgtcagaactcgtactgaatcctcgtctcgtcaagagtggccgaaccaatgacttcatcttcatcctgaacaaattcaaaaacatc |
10825003 |
T |
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| Q |
101 |
acaaacacatacaagatttaaacaatgtttgttaattactgtgattttgttcctattttcacgattttctcatgaggtttgttcagtgataagaaaatat |
200 |
Q |
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| T |
10825004 |
acaaacacatacaagatttaaacaatgtttgttaattactgtgattttgttcctattttcacgattttctcatgaggtttgttcagtgataagaaaatat |
10825103 |
T |
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| Q |
201 |
aggtttcatacctggaagaggaagagtgtgtctcgccgaaaatgtgcagaa |
251 |
Q |
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| T |
10825104 |
aggtttcatacct-gaagaggaagagtgtgtgtcgccgaaaatgtgcagaa |
10825153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 36142972 - 36142810
Alignment:
| Q |
1 |
agaggcaaccattttgtcagaactcgtactgaatcctcgtctcgtcaagagtggccgaaccaatgacttcatcttcatcctgaacaaattcaaaaacat- |
99 |
Q |
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||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
36142972 |
agaggcaaccattttctcagagctcgtactgaatcctcgcctcatcaagagtggccgaaccaatgacatcatcttcatcctgaacgaattcaaaaacatc |
36142873 |
T |
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| Q |
100 |
-----cacaaacacatacaagatttaaacaatgtttgttaattactgtgattttgttcctatt |
157 |
Q |
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|||||||||| | | |||| ||||| ||||| |||||| | ||||||||||||||||| |
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| T |
36142872 |
acacacacaaacacaaagaggattcaaacattgtttattaatttccgtgattttgttcctatt |
36142810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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