View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12011_high_3 (Length: 473)
Name: NF12011_high_3
Description: NF12011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12011_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 460
Target Start/End: Original strand, 52082086 - 52082543
Alignment:
| Q |
17 |
aagatatatgtcatgatgagtttcctttacttctaatcaatcaataataatcaccatacccagaatgtgcgat---------------taccttgtaaaa |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
52082086 |
aagatatatgtcatgatgagtttcctttacttctaatcaatcaataataatcaccatacccagaatgtgcgatattgttcttggagattaccttgtaaa- |
52082184 |
T |
|
| Q |
102 |
tgttagcnnnnnnntaatcatcaaccaaactacaattctttctttaatatatgtcatgnnnnnnnnnnnnnnnncatgggaaaagtaaagattgaaatgt |
201 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
52082185 |
tgttagcaataaaataatcatcaaccaaactacatttctttctttaatatatgtcatgaaaaagaaaaacaaaacatgggaaaagtaaagattgaaatgt |
52082284 |
T |
|
| Q |
202 |
tgtgatgaagataacatttcaaataatagttttatgactttcagaatactagaaaacaaggcatccatggttcaataaaggtttccacttgtcgtcacta |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
52082285 |
tgtgatgaagataacatttcaaataatagttttatcactttcagaatactagaaaacaaggcatccaaggttcaataaaggtttccacttgtcgtcacta |
52082384 |
T |
|
| Q |
302 |
ggacaaaaatgagagggagccataatttttctcaatgatgaccttaaaattaccatcaccatccagaaattaacatcagcacacacattatgacaatccc |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52082385 |
ggacaaaaatgagagggagccataatttttctcaatgatgaccttaaaattaccatcaccatccagaaattaacatcagcacacacattatgacaatccc |
52082484 |
T |
|
| Q |
402 |
acaaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctct |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
52082485 |
acaaatttatctctctcagtcgtgtgcagttttctactacgtgcccgactcctttctct |
52082543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 179 - 460
Target Start/End: Original strand, 52092458 - 52092739
Alignment:
| Q |
179 |
gggaaaagtaaagattgaaatgttgtgatgaagataacatttcaaataatagttttatgactttcagaatactagaaaacaaggcatccatggttcaata |
278 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52092458 |
gggaaaaatgaagattgaaatgttgtgatgaagataacatttcaaataactgttttatcactttcagaatactagaaaacaaggcatccatggttcaata |
52092557 |
T |
|
| Q |
279 |
aaggtttccacttgtcgtcactaggacaaaaatgagagggagccataat----ttttctcaatgatgaccttaaaattaccatcaccatccagaaattaa |
374 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| |||||||| | |||||||||||| |
|
|
| T |
52092558 |
aaggtttccacttgtcgtcact---acaaaaatgagagggagccataatcttaatttctcaatgatgaccttgaaaataccatcatcgtccagaaattaa |
52092654 |
T |
|
| Q |
375 |
catcagcacacacattatgacaatcccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctct |
460 |
Q |
| |
|
||||| ||||||| | | ||||| | | | |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
52092655 |
catcaacacacacctcacgacaacctcgtatatttatctctctcaatcgtgtgcagtttt-tactacgtgcctcactcctttctct |
52092739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 52092305 - 52092350
Alignment:
| Q |
36 |
gtttcctttacttctaatcaatcaataataatcaccatacccagaa |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
52092305 |
gtttcctttacttctaatcaatcaataataatcaccaaaaccagaa |
52092350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 460
Target Start/End: Complemental strand, 35901836 - 35901779
Alignment:
| Q |
403 |
caaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctct |
460 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||| || || ||||||||||||||| |
|
|
| T |
35901836 |
caaatttatctctctcagttgtgtacagttttctatgacttgtctcactcctttctct |
35901779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 460
Target Start/End: Original strand, 1754287 - 1754481
Alignment:
| Q |
266 |
ccatggttcaataaaggtttccacttgtcgtcactaggacaaaaatgagagggagccataatttttctcaatgatgaccttaaaattaccatcaccatcc |
365 |
Q |
| |
|
||||| |||||||| |||||||||||| ||||||||| ||||| || ||||| | | || |||||||| ||| |||| | | ||||||||| ||| |
|
|
| T |
1754287 |
ccatgattcaataagggtttccacttgctatcactaggataaaaaccagggggagtcttgatctttctcaacaatggccttgacaataccatcacattcc |
1754386 |
T |
|
| Q |
366 |
agaaattaacatcagcacacacattatgacaatcccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctct |
460 |
Q |
| |
|
| |||| ||||||| | |||||| | ||| | |||| |||||||| |||| |||||||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
1754387 |
ataaatcaacatcaacggccacattgacataatgtcgcaaacttatctctttcaggcgtgtgcatttttctactacttgcttcactcctttctct |
1754481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 460
Target Start/End: Complemental strand, 1528397 - 1528340
Alignment:
| Q |
403 |
caaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttctct |
460 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| || ||| | ||||| |||||| |
|
|
| T |
1528397 |
caaatttatctctctcagttgtgtgcagttttctacaacttgcatgactccattctct |
1528340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 458
Target Start/End: Original strand, 6006218 - 6006287
Alignment:
| Q |
389 |
ttatgacaatcccacaaatttatctctctcagtcgtgtgcagttttctactacgtgcctcactcctttct |
458 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | || ||||||||||||| || ||| ||||||| |||| |
|
|
| T |
6006218 |
ttatgacaatcctgcaaatttatctctctcaattgtttgcagttttctacgacttgcatcactcccttct |
6006287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 438
Target Start/End: Complemental strand, 12120336 - 12120301
Alignment:
| Q |
403 |
caaatttatctctctcagtcgtgtgcagttttctac |
438 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12120336 |
caaatttatctctctcagttgtgtgcagttttctac |
12120301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University