View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12011_low_10 (Length: 348)
Name: NF12011_low_10
Description: NF12011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12011_low_10 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 37640894 - 37640661
Alignment:
| Q |
1 |
aaaacacgtgataatttcataatcatattaacaaaagttgaacctcacatttcatagttaggagaattgttacgaaattgaagcattaacacatattgtt |
100 |
Q |
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| T |
37640894 |
aaaacacgtgataatttcataatcatattaacaaaagttgaacctcacatttcatagttaggagaattgttacgaaattgaagcattaacacatattgct |
37640795 |
T |
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| Q |
101 |
tcacgagttccagataaagtctataagcttgtggatgaacttttctcatcggaacaatcctgaaatcattcaaaaa------------taacaataataa |
188 |
Q |
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| T |
37640794 |
tcacgagttccagataaagtctataagcttgtggataaacttttctcatcggaacaatcctgaaatcattcaaaaataataataatattaataataataa |
37640695 |
T |
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| Q |
189 |
atttggattaaaatttacaatgcaattgaatcat |
222 |
Q |
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| T |
37640694 |
atttggattaaaatttacaatgcaattgaatcat |
37640661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 287 - 348
Target Start/End: Complemental strand, 37640596 - 37640535
Alignment:
| Q |
287 |
gtaacggaaatgtggaagaacctagtggagagaagagcgacgaggagcaacggaggaagaag |
348 |
Q |
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| T |
37640596 |
gtaacggaaatgtggaagaacctagtggagagaagagcgacgaggagcaacggaggaagaag |
37640535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 2156744 - 2156805
Alignment:
| Q |
287 |
gtaacggaaatgtggaagaacctagtggagagaagagcgacgaggagcaacggaggaagaag |
348 |
Q |
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| T |
2156744 |
gtaacggaaatgtggaagaacatagtggagagaagagcgatgaggagtaacggaggaagaag |
2156805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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