View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12011_low_11 (Length: 337)
Name: NF12011_low_11
Description: NF12011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12011_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 27125472 - 27125200
Alignment:
| Q |
1 |
tcctcaaactgtgtaggaccgccatagataataaagctctcagaataataaacctcaaactgtgtaggaccaccatagttgtaactgtgtaggatcacaa |
100 |
Q |
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| T |
27125472 |
tcctcaaactgtgtaggatcaccatagataataaagctttcagaataataaacatcaaactgtgtaggaccaccatagttgtaactgtgtagtatcacaa |
27125373 |
T |
|
| Q |
101 |
agcttcaactgattttggtgacaattcggtcaccaacaaggtgtgcaaggaaccacaaattaggtagatattgttaatcaataccaatcgagtattgaat |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||||||||| |
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| T |
27125372 |
-gcttcaactgattttggtgacaattcattcaccaacaaggtgtacaaggaaccacaaattatgtagacattgttaatcaagaccaatcgagtattgaat |
27125274 |
T |
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| Q |
201 |
cggtaggacctgaataggttcagccgattcatatacaattggcacattctacctcttattttcaacctaatatttt |
276 |
Q |
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| T |
27125273 |
cggt--gacctcaataggttcagctgattcatatacaattggcacattctacctcctattttcaacctaatatttt |
27125200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 27125140 - 27125084
Alignment:
| Q |
275 |
ttcaacctagacacatacatatggtgaggaggccacctgaaggtgtaagacatattg |
331 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27125140 |
ttcaatctagacagatacatatggtgaggaggccacctgaaggtgtaagacatattg |
27125084 |
T |
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