View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12011_low_12 (Length: 335)
Name: NF12011_low_12
Description: NF12011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12011_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 4489012 - 4489340
Alignment:
| Q |
1 |
tcattgaatccacgtcctgaagtgcctcagctagcagagctagcatcccgtaatctccaccgtacccgtcatcttcgtagattactactactttcttcca |
100 |
Q |
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| T |
4489012 |
tcattgagtccacgtcctgaagtgcctcagctagcagagctagcatcccgtaatctccaccgtacccgttatcttcgtagattactactactttcttcca |
4489111 |
T |
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| Q |
101 |
gctataagcctgcactatttctgtaatgcattttatatatgctgtaccagtgttagctagtctcaccagaaaaggccaccgagcttccatcaatggtggg |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4489112 |
gctataagcctgcactatttctgcaatgcattttatatatgctgtaccagtgttagctagtctcaccagaaaaggccaccgagcttccatcaatggtggg |
4489211 |
T |
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| Q |
201 |
gtaatggtaggagctgcaaaggatatgattggaacttgagctttgcttcctacttcagccaccatagctgcttcttgccatgtttgcatccctataatca |
300 |
Q |
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| T |
4489212 |
gtaatggtaggagctacaaaggatatgactggaacttgagctttgcttcctacttcagccaccatagctgcttcttgccatgtttgcatccctataatca |
4489311 |
T |
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| Q |
301 |
cttgcaccttttgcacataaatcatctct |
329 |
Q |
| |
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| T |
4489312 |
cttgcaccttttgcacattaatcatctct |
4489340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 81 - 329
Target Start/End: Original strand, 4484925 - 4485173
Alignment:
| Q |
81 |
attactactactttcttccagctataagcctgcactatttctgtaatgcattttatatatgctgtaccagtgttagctagtctcaccagaaaaggccacc |
180 |
Q |
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| T |
4484925 |
attactactactctcttccagcaataagcatgcactatttctgcaatgcattttatgtatgtcgtaccattgttagctagtctcactagaaaaggccatc |
4485024 |
T |
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| Q |
181 |
gagcttccatcaatggtggggtaatggtaggagctgcaaaggatatgattggaacttgagctttgcttcctacttcagccaccatagctgcttcttgcca |
280 |
Q |
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| T |
4485025 |
gattattcatcaaaggtggggtaatggtaggtgctgcaaaggatatgataggaacttgagctttgcttcctatatcttccattatagctgcttctggcca |
4485124 |
T |
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| Q |
281 |
tgtttgcatccctataatcacttgcaccttttgcacataaatcatctct |
329 |
Q |
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||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4485125 |
tgtgtgcatccctataatcacttgcaccttttgcacattaatcatctct |
4485173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4484044 - 4484127
Alignment:
| Q |
1 |
tcattgaatccacgtcctgaagtgcctcagctagcagagctagcatcccgtaatctccaccgtacccgtcatcttcgtagatta |
84 |
Q |
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||||||||||||| || ||||| || ||| ||| ||| | ||||||||| ||||||||||| ||||| ||||||| |||||||| |
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| T |
4484044 |
tcattgaatccacatcttgaagggcttcacctaacagggttagcatcccataatctccaccatacccatcatctttgtagatta |
4484127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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