View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12011_low_14 (Length: 310)
Name: NF12011_low_14
Description: NF12011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12011_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 32311158 - 32310895
Alignment:
| Q |
19 |
cacagaagcagttgtgacttgcaatatcatatctaggaatcatttctggatctctaattgttagagttgaatagggagcttatacaaaaatatacttcaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32311158 |
cacagaagcagttgtgacttgcaatatcatatctaagaatcatttattgatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaa |
32311059 |
T |
|
| Q |
119 |
taccttggaatcaaagttttaataaagcataccataacac---------cttatatttactgcagccttgcaacactatagtaaacattttttaacacgg |
209 |
Q |
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|||||||||||| ||||||||||||| |||| || ||||| ||||||||| |||||||||||||||||| ||||||||||||| ||| | | |
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| T |
32311058 |
taccttggaatccaagttttaataaaacataacagaacactttgacttgtttatatttattgcagccttgcaacactaaagtaaacatttttcaacccag |
32310959 |
T |
|
| Q |
210 |
tgccacaaaaatctataaattctgtaacagttgtcactttacatggccaaaactaccctcaaat |
273 |
Q |
| |
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||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32310958 |
tgccatcaaaatcaataaattctgtaacagctgtcactttacatggccaaaactaccctcaaat |
32310895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 41 - 263
Target Start/End: Original strand, 32813371 - 32813602
Alignment:
| Q |
41 |
aatatcatatctaggaatcatttctggatctctaattgttagagttgaatagggagcttatacaaaaatatacttcaataccttggaatcaaagttttaa |
140 |
Q |
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||||||||||||| ||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32813371 |
aatatcatatctaagaatcatttattgatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagttttaa |
32813470 |
T |
|
| Q |
141 |
taaagcataccataacac---------cttatatttactgcagccttgcaacactatagtaaacattttttaacacggtgccacaaaaatctataaattc |
231 |
Q |
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|||| |||| || ||||| ||||||||| |||||||||||||||||| |||||||| |||||||||| || ||| |||||| |||||||| |
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| T |
32813471 |
taaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaacagtttttaacacagttccatcaaaatcaataaattc |
32813570 |
T |
|
| Q |
232 |
tgtaacagttgtcactttacatggccaaaact |
263 |
Q |
| |
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||||||| |||||| ||||||||||||||||| |
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| T |
32813571 |
tgtaacatttgtcattttacatggccaaaact |
32813602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 28222616 - 28222449
Alignment:
| Q |
19 |
cacagaagcagttgtgacttgcaatatcatatctaggaatcatttctggatctctaattgttagagttgaatagggagcttatacaaaaatatacttcaa |
118 |
Q |
| |
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||||||||||| ||||||||| | ||||||||||| |||| ||| || ||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28222616 |
cacagaagcagctgtgacttgtattatcatatctaagaatgattccttgatctataattgtaagagttgaatagggagcttatacaaaaatatacttcaa |
28222517 |
T |
|
| Q |
119 |
taccttggaatcaaagttttaataaagcataccataacaccttatatttactgcagccttgcaacacta |
187 |
Q |
| |
|
|||||||||||| |||||||| ||| ||||| || |||| ||| ||||| |||||||||||||||||| |
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|
| T |
28222516 |
taccttggaatccaagttttattaaggcataacagaaca-ctttgatttattgcagccttgcaacacta |
28222449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 39 - 200
Target Start/End: Original strand, 32792566 - 32792736
Alignment:
| Q |
39 |
gcaatatcatatctaggaatcatttctggatctctaattgttagagttgaatagggagcttatacaaaaatatacttcaataccttggaatcaaagtttt |
138 |
Q |
| |
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||||| ||||||||| ||||||||| | ||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32792566 |
gcaatctcatatctaagaatcatttattgatctctaattgtaagagttcaatacggagcttatacaaaaatatacttcaataccttggaatccaagtttt |
32792665 |
T |
|
| Q |
139 |
aataaagcataccataaca---------ccttatatttactgcagccttgcaacactatagtaaacatttt |
200 |
Q |
| |
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||||||||||| || |||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32792666 |
aataaagcataacagaacaatttgatttgtttatatttattgcagccttgcaacactatagtaaacatttt |
32792736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 100 - 273
Target Start/End: Original strand, 32799246 - 32799428
Alignment:
| Q |
100 |
atacaaaaatatacttcaataccttggaatcaaagttttaataaagcataccataacacctt---------atatttactgcagccttgcaacactatag |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||| | ||||| || ||||||| |||||||||||||||||| || |
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| T |
32799246 |
atacaaaaatatacttcaataccttggaatctaagttttaataaggcataaaagaacactttgatttgttgatatttattgcagccttgcaacactagag |
32799345 |
T |
|
| Q |
191 |
taaacattttttaacacggtgccacaaaaatctataaattctgtaacagttgtcactttacatggccaaaactaccctcaaat |
273 |
Q |
| |
|
||||||| |||||| || ||||||||||||| |||||||||| ||| || |||||||||||||||||||||||||||| |||| |
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| T |
32799346 |
taaacatattttaaaacagtgccacaaaaatttataaattctataatagctgtcactttacatggccaaaactaccctaaaat |
32799428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 28213660 - 28213797
Alignment:
| Q |
19 |
cacagaagcagttgtgacttgcaatatcatatctaggaatcatttctggatctctaattgttagagttgaatagggagcttatacaaaaatatacttcaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||| | ||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
28213660 |
cacagaagcagttgtgacttgcaatatcatatcatagaattattccaagatctctaattgtaagagttgaatagggagctta--caaaaatatacttcaa |
28213757 |
T |
|
| Q |
119 |
taccttggaatcaaagttttaataaagcataccataacac |
158 |
Q |
| |
|
|||||||||||| |||||||| ||| ||||| || ||||| |
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| T |
28213758 |
taccttggaatccaagttttattaaggcataacagaacac |
28213797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 55 - 207
Target Start/End: Original strand, 32563728 - 32563885
Alignment:
| Q |
55 |
gaatcatttctggatctctaattgttagagttgaatagggagcttatacaaaaatatacttcaataccttggaatcaaagttttaataaagcataccata |
154 |
Q |
| |
|
||||||||| | ||| ||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| || | |
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| T |
32563728 |
gaatcatttattgatatctaattgtaagagctgaatagggagcttataaaaaaatatacttcaataccttggaatccaagttttaataaagcataacaga |
32563827 |
T |
|
| Q |
155 |
acac---------cttatatttactgcagccttgcaacactatagtaaacattttttaacac |
207 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
32563828 |
acactttgatttgtttatatttattgcagccttgcaaca----agtaaacattttttaacac |
32563885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 32790307 - 32790374
Alignment:
| Q |
19 |
cacagaagcagttgtgacttgcaatatcatatctaggaatcatttctggatctctaattgttagagtt |
86 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| |||||| |
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|
| T |
32790307 |
cacagaagcagttgtgacttgcaatatcatatctaagaatcatttattaatctctaattgtaagagtt |
32790374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 32785109 - 32785214
Alignment:
| Q |
96 |
gcttatacaaaa-atatacttcaataccttggaatcaaagttttaataaagcataccataacacctt---------atatttactgcagccttgcaacac |
185 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||| |||||||||||| ||||| || |||| || |||||||||||||||||||||||| |
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|
| T |
32785109 |
gcttattcaaaagatatacttcaataccttggaatccaagttttaataaggcataacagaacattttcatttgttgatatttactgcagccttgcaacac |
32785208 |
T |
|
| Q |
186 |
tatagt |
191 |
Q |
| |
|
|||||| |
|
|
| T |
32785209 |
tatagt |
32785214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 32799198 - 32799247
Alignment:
| Q |
27 |
cagttgtgacttgcaatatcatatctaggaatcatttctggatctctaat |
76 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
32799198 |
cagttgtgacttgcaatatcatatctaagaatcattccttgatctctaat |
32799247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 32306821 - 32306765
Alignment:
| Q |
217 |
aaaatctataaattctgtaacagttgtcactttacatggccaaaactaccctcaaat |
273 |
Q |
| |
|
|||||| ||||||||||||| || ||| |||||||||||||||||||||||| |||| |
|
|
| T |
32306821 |
aaaatcaataaattctgtaaaagctgtaactttacatggccaaaactaccctaaaat |
32306765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 273
Target Start/End: Original strand, 32563887 - 32563926
Alignment:
| Q |
234 |
taacagttgtcactttacatggccaaaactaccctcaaat |
273 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32563887 |
taacagctgtcactttacatggccaaaactaccctcaaat |
32563926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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