View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12011_low_19 (Length: 267)
Name: NF12011_low_19
Description: NF12011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12011_low_19 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 5 - 267
Target Start/End: Original strand, 16130509 - 16130771
Alignment:
| Q |
5 |
ggtcatggctggtccaatctcatcaaccgatgtgcataagatccaacgacataatgcggatgacatgatcgatatgattagtaacttacctgagggcgtt |
104 |
Q |
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| T |
16130509 |
ggtcatggctggtccaatctcatcaaccgatgtgcataagatccaacgacataatatggatgacatgatcgatatgattagtgacttacctgaggccgtt |
16130608 |
T |
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| Q |
105 |
cttcttcgtattctttctttactcccgaccaaagatgttgtaagaacttccatactagcaaagaagtggaaccacttgtggacctacttatctgcttttc |
204 |
Q |
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| T |
16130609 |
cttcttcatattctttctttactcccgaccaaagatgttgtaagaacttccatactagcaaagaagtggaagcacttgtggacctacttatctgcctttc |
16130708 |
T |
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| Q |
205 |
attttgaaacttttggtcgtctgaatgagtcaagcctccaaaatcagaaaaacaaggcaaatt |
267 |
Q |
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| T |
16130709 |
attttgaaacttttcgtcgtctgaatgagtcaagcctccaaaatcagaaaaacaaggcaaatt |
16130771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 115 - 267
Target Start/End: Complemental strand, 9891847 - 9891695
Alignment:
| Q |
115 |
ttctttctttactcccgaccaaagatgttgtaagaacttccatactagcaaagaagtggaaccacttgtggacctacttatctgcttttcattttgaaac |
214 |
Q |
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| T |
9891847 |
ttctttcgttactccctaccaaagatgctgtaagaacttccatattagcaaagaactggaggtacttgtgggcctacttatctgcctttgattttgaaac |
9891748 |
T |
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| Q |
215 |
ttttggtcgtctgaatgagtcaagcctccaaaatcagaaaaacaaggcaaatt |
267 |
Q |
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| T |
9891747 |
tttttgtcgtctgaatgagtcaagcctccaaaatcagaaaaacagggaaaatt |
9891695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 187
Target Start/End: Original strand, 17593989 - 17594101
Alignment:
| Q |
75 |
gatatgattagtaacttacctgagggcgttcttcttcgtattctttctttactcccgaccaaagatgttgtaagaacttccatactagcaaagaagtgga |
174 |
Q |
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| T |
17593989 |
gatatgattagtgaattacccgaggctgttcttcttcatattctttctttactccctactaaagatgctgtaagaacttccatattagctacaaagtgga |
17594088 |
T |
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| Q |
175 |
accacttgtggac |
187 |
Q |
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| T |
17594089 |
aatacttgtggac |
17594101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 12412982 - 12413045
Alignment:
| Q |
9 |
atggctggtccaatctcatcaaccgatgtgcataagatccaacgacataatgcggatgacatga |
72 |
Q |
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| T |
12412982 |
atggctggtccaatctcatcaacatatgtgcataagatccaacgacatactatggatgacatga |
12413045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 115 - 267
Target Start/End: Original strand, 1095059 - 1095211
Alignment:
| Q |
115 |
ttctttctttactcccgaccaaagatgttgtaagaacttccatactagcaaagaagtggaaccacttgtggacctacttatctgcttttcattttgaaac |
214 |
Q |
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||||||| |||||||| |||||||||| |||||||||||||||| |||||||||| |||| |||||||| |||||||||||| ||| ||||| |||| |
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| T |
1095059 |
ttctttcgttactccctaccaaagatgctgtaagaacttccatattagcaaagaactggaggtacttgtgggcctacttatctggctttgatttttaaac |
1095158 |
T |
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| Q |
215 |
ttttggtcgtctgaatgagtcaagcctccaaaatcagaaaaacaaggcaaatt |
267 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
1095159 |
ttttcatcgtctgaatgagtcaagcctccaaaatcagaaaaacagggaaaatt |
1095211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 187
Target Start/End: Complemental strand, 14729498 - 14729386
Alignment:
| Q |
75 |
gatatgattagtaacttacctgagggcgttcttcttcgtattctttctttactcccgaccaaagatgttgtaagaacttccatactagcaaagaagtgga |
174 |
Q |
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|||||||| ||| | ||||| |||| |||||||||| |||||||||||||||||| || ||||||| |||||||||||||||| |||| | ||||||| |
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| T |
14729498 |
gatatgataagtgaattacccgaggctgttcttcttcatattctttctttactccctactaaagatgctgtaagaacttccatattagctacaaagtgga |
14729399 |
T |
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| Q |
175 |
accacttgtggac |
187 |
Q |
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| T |
14729398 |
aatacttgtggac |
14729386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 7638410 - 7638471
Alignment:
| Q |
113 |
tattctttctttactcccgaccaaagatgttgtaagaacttccatactagcaaagaagtgga |
174 |
Q |
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|||||| ||||| ||||| |||||||||||| ||||||||||| || |||||| ||||||| |
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| T |
7638410 |
tattctatctttgctccctaccaaagatgttataagaacttccgtattagcaacaaagtgga |
7638471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 31274947 - 31274756
Alignment:
| Q |
7 |
tcatggctggtccaatctcatcaaccgatgtgcataagatccaacgacataatgcggatgacatgatcgatatgattagtaacttacctgagggcgttct |
106 |
Q |
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|||| |||||| |||| |||||||| |||||||||||||||||||| | | | || ||||||| |||||| |||||| | ||||||||||| ||||| |
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| T |
31274947 |
tcatagctggtacaatgtcatcaacagatgtgcataagatccaacgtcgaattttgggcgacatgaacgatataattagtgatttacctgagggtgttct |
31274848 |
T |
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| Q |
107 |
tcttcgtattctttctttactcccgaccaaagatgttgtaagaacttccatactagcaaagaagtggaaccacttgtggacctacttatctg |
198 |
Q |
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| T |
31274847 |
tcttcatattctttctttactacctatcgaagatgttgtaagaacttccgtgttagcaaagaagtggaggtatttgtggacctacttatctg |
31274756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 209
Target Start/End: Complemental strand, 31239971 - 31239837
Alignment:
| Q |
75 |
gatatgattagtaacttacctgagggcgttcttcttcgtattctttctttactcccgaccaaagatgttgtaagaacttccatactagcaaagaagtgga |
174 |
Q |
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||||| ||||| |||||||| |||||||||||||||| ||||||||| || ||||| || ||||||| |||||||||||||||| | || |||||||||| |
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| T |
31239971 |
gatatcattagcaacttacccgagggcgttcttcttcatattctttcattgctccctacgaaagatgctgtaagaacttccatattggctaagaagtgga |
31239872 |
T |
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| Q |
175 |
accacttgtggacctacttatctgcttttcatttt |
209 |
Q |
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| || |||||||||||||||||||| ||| ||||| |
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| T |
31239871 |
aacaattgtggacctacttatctgcatttgatttt |
31239837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 209
Target Start/End: Complemental strand, 31256468 - 31256334
Alignment:
| Q |
75 |
gatatgattagtaacttacctgagggcgttcttcttcgtattctttctttactcccgaccaaagatgttgtaagaacttccatactagcaaagaagtgga |
174 |
Q |
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||||| ||||| |||||||| |||||||||||||||| ||||||||| || ||||| || ||||||| |||||||||||||||| | || |||||||||| |
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| T |
31256468 |
gatatcattagcaacttacccgagggcgttcttcttcatattctttcattgctccctacgaaagatgctgtaagaacttccatattggctaagaagtgga |
31256369 |
T |
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| Q |
175 |
accacttgtggacctacttatctgcttttcatttt |
209 |
Q |
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| || |||||||||||||||||||| ||| ||||| |
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| T |
31256368 |
aacaattgtggacctacttatctgcatttgatttt |
31256334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 54220515 - 54220380
Alignment:
| Q |
52 |
gacataatgcggatgacatgatcgatatgattagtaacttacctgagggcgttcttcttcgtattctttctttactcccgaccaaagatgttgtaagaac |
151 |
Q |
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|||||||||||| | |||||| |||||||||||| |||||||||||| |||||||||| ||||||||||||| |||| |||||||||| ||||| ||| |
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| T |
54220515 |
gacataatgcgggtaacatgaatgatatgattagtgacttacctgaggacgttcttcttgatattctttctttagtccctaccaaagatgctgtaaaaac |
54220416 |
T |
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| Q |
152 |
ttccatactagcaaagaagtggaaccacttgtggac |
187 |
Q |
| |
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|||||| ||| || |||||||| ||||||||||| |
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| T |
54220415 |
ctccatattagtgaaaaagtggaaacacttgtggac |
54220380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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