View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12011_low_2 (Length: 526)
Name: NF12011_low_2
Description: NF12011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12011_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 390
Target Start/End: Complemental strand, 40224327 - 40223959
Alignment:
| Q |
17 |
tcagggtctgcgacagaaacaagaaagagttgctcagaccaagatagttacatcctcgtaccagataatttttctggtaatttgcccaacactttgtttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40224327 |
tcagggtctgcgacagaaacaagaaagagttgctcagaccaagatagttacatcctcgtaccagataatttttctggtaatttgcccaacactttgtttt |
40224228 |
T |
|
| Q |
117 |
atgatttgaaatattctctannnnnnnaataaatagtgaatccttaatttcggctatgcttggatctagtgttttggtttcggagtggnnnnnnnnnnnn |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40224227 |
atgatttgaaatattctctatttttt-aataaatagtgaatccttaatttcggctatgcttggatctagtgttttggttttggagtggttattttttttt |
40224129 |
T |
|
| Q |
217 |
nnnnggaagaattggcatgcaaattttagagtgctaagcttgtatatttgttatcagaagaatcgtacttaagtaacataatttctttaatttagaacca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40224128 |
----ggaagaattggcatgcaaattttagagtgctaagcttgtatatttgttatcagaagaatcgtacttaagtaacataatttctttaatttagaacga |
40224033 |
T |
|
| Q |
317 |
aaaaactttatatgtgtgaattagataaaactaggatatggataaatcgatacaactaattagacttaggtgca |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40224032 |
aaaaactttatatgtgtgaattagataaaactaggatatcgataaatcgatacaactaattagacttaggtgca |
40223959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 512
Target Start/End: Complemental strand, 40223894 - 40223837
Alignment:
| Q |
455 |
ataccagcacttactatattttttaagttaatgtannnnnnnggttcgggttgatgtc |
512 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
40223894 |
ataccagcacttactatatttttgaagttaatgtatttttttggttcgggttgatgtc |
40223837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University