View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12011_low_25 (Length: 223)

Name: NF12011_low_25
Description: NF12011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12011_low_25
NF12011_low_25
[»] chr3 (3 HSPs)
chr3 (1-203)||(8341857-8342059)
chr3 (4-110)||(8333037-8333143)
chr3 (52-179)||(26727477-26727604)
[»] chr2 (2 HSPs)
chr2 (4-205)||(29228546-29228747)
chr2 (4-205)||(29341845-29342046)
[»] scaffold0061 (1 HSPs)
scaffold0061 (4-203)||(29813-30012)
[»] scaffold0017 (2 HSPs)
scaffold0017 (4-203)||(168780-168979)
scaffold0017 (4-205)||(173787-173988)
[»] chr1 (6 HSPs)
chr1 (4-205)||(44144773-44144975)
chr1 (52-205)||(44785757-44785910)
chr1 (52-205)||(35898971-35899124)
chr1 (98-202)||(44611682-44611786)
chr1 (4-177)||(11544691-11544868)
chr1 (4-103)||(44612085-44612184)
[»] chr5 (9 HSPs)
chr5 (7-89)||(29508115-29508197)
chr5 (4-92)||(29507536-29507624)
chr5 (7-92)||(29507611-29507696)
chr5 (7-92)||(29507683-29507768)
chr5 (54-92)||(29507874-29507912)
chr5 (54-92)||(29507946-29507984)
chr5 (54-92)||(29508090-29508128)
chr5 (7-92)||(29507755-29507840)
chr5 (7-92)||(29507971-29508056)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 8342059 - 8341857
Alignment:
Q  1 aacgaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaa 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8342059 aacgaaagatttccgagttggaaagggattgtaccaacaagatcattaagactgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaa 8341960  T
Q  101 tcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgag 200  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8341959 tctttccctcataaccaccgtttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgag 8341860  T
Q  201 gtc 203  Q
    |||    
T  8341859 gtc 8341857  T

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Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 8333143 - 8333037
Alignment:
Q  4 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 103  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8333143 gaaagattttcgagttggaaagggatttttccaacaagatcattaagtctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 8333044  T
Q  104 tcccctc 110  Q
    | |||||    
T  8333043 ttccctc 8333037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 179
Target Start/End: Complemental strand, 26727604 - 26727477
Alignment:
Q  52 ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctga 151  Q
    ||||||| |||||||||||| |||||||| || |||||||||| |||||||||| | | | ||    |||||||||||| |||||||||||| ||| |||    
T  26727604 ctgagatcaaggtgttgcaactgtgagagttttccaagttgagaaggaatcttctcattaaaaaaggcatttgagagattaaggtatcgtaaattgatga 26727505  T
Q  152 acgatccaataaattttggaatttgacc 179  Q
    | || |||||||| ||||| || |||||    
T  26727504 aggagccaataaaatttgggatatgacc 26727477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 29228546 - 29228747
Alignment:
Q  4 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 103  Q
    |||||||||||||||||||||||||||| |||||  || |||||    || |||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  29228546 gaaagatttccgagttggaaagggattgctccaatgagttcattgttgctaagatcaaggtgttgcaattgtgagagatttccaagttgagaaggaatct 29228645  T
Q  104 tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc 203  Q
    |||| ||||||  |||  |||||||||  |||||| |||| |||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||    
T  29228646 tcccatcataatgacctgttgagagattgaggtattgtaacttgctgaaggagccaataaattttgggatttgaccactagtatgcaaataactgaggtc 29228745  T
Q  204 ta 205  Q
    ||    
T  29228746 ta 29228747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 29341845 - 29342046
Alignment:
Q  4 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 103  Q
    |||||||||||||||||||||||||||| |||||  || |||||    || |||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  29341845 gaaagatttccgagttggaaagggattgctccaatgagttcattgttgctaagatcaaggtgttgcaattgtgagagatttccaagttgagaaggaatct 29341944  T
Q  104 tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc 203  Q
    |||| ||||||  |||  |||||||||  |||||| |||| |||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||    
T  29341945 tcccatcataatgacctgttgagagattgaggtattgtaacttgctgaaggagccaataaattttgggatttgaccactagtatgcaaataactgaggtc 29342044  T
Q  204 ta 205  Q
    ||    
T  29342045 ta 29342046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 29813 - 30012
Alignment:
Q  4 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 103  Q
    |||||||||||||||||||||||||||  ||||   ||||||||    || |||| ||| ||| |||||||||| ||||||||||||||| |||||||||    
T  29813 gaaagatttccgagttggaaagggatttctccattcagatcattcctgctaagatcaagatgtcgcaattgtgatagattcccaagttgaataggaatct 29912  T
Q  104 tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc 203  Q
    |||| ||||||||||||  |||||||||||||||| |||| |||||||  ||||||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  29913 tcccatcataaccaccaaatgagagatcaaggtattgtaatttgctgatggatccaataaattttgggatttgaccactggtattcaaatatctgaggtc 30012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 203
Target Start/End: Complemental strand, 168979 - 168780
Alignment:
Q  4 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 103  Q
    |||||||||||||||||||||||||||  ||||   ||||||||    || |||| ||| ||| |||||||||| ||||||||||||||| |||||||||    
T  168979 gaaagatttccgagttggaaagggatttctccattcagatcattcctgctaagatcaagatgtcgcaattgtgatagattcccaagttgaataggaatct 168880  T
Q  104 tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc 203  Q
    |||| ||||||||||||  |||||||||||||||| |||| |||||||  ||||||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  168879 tcccatcataaccaccaaatgagagatcaaggtattgtaatttgctgatggatccaataaattttgggatttgaccactggtattcaaatatctgaggtc 168780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 4 - 205
Target Start/End: Complemental strand, 173988 - 173787
Alignment:
Q  4 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 103  Q
    |||||||||||||||||||||||||||  |||||  || |||||  | || |||| ||||| |  ||||||||| ||||| ||||||| |  ||||| ||    
T  173988 gaaagatttccgagttggaaagggatttctccaatgagttcattgtagctaagatcaaggtatcacaattgtgatagatttccaagttcaaaaggaacct 173889  T
Q  104 tcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggtc 203  Q
    |||| ||||||  ||||||||| ||||||||||  || || |||||||| || |||||||||||||  ||||||| ||||||||||||||||||||||||    
T  173888 tcccatcataatgaccatttgacagatcaaggtgccgcaacttgctgaaggagccaataaattttgagatttgactactagtattcaaataactgaggtc 173789  T
Q  204 ta 205  Q
    ||    
T  173788 ta 173787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 4 - 205
Target Start/End: Complemental strand, 44144975 - 44144773
Alignment:
Q  4 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 103  Q
    |||||||||||||||||||||||||||  |||||  || |||||  | || | || ||||||| ||||| ||||||||||||||||||||| ||||||||    
T  44144975 gaaagatttccgagttggaaagggatttctccaatgagttcattgtagctaaaatcaaggtgtcgcaatcgtgagagattcccaagttgagcaggaatct 44144876  T
Q  104 tcccctcataaccaccatttgagagatc-aaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataactgaggt 202  Q
    |||| ||||||||||||  ||||||||| ||||| |||||| |||||||| || |||||||||||||| |||||||||| ||||||||||||||| ||||    
T  44144875 tcccatcataaccaccaactgagagatcaaaggtgtcgtaacttgctgaaggagccaataaattttgggatttgaccaccagtattcaaataacttaggt 44144776  T
Q  203 cta 205  Q
    |||    
T  44144775 cta 44144773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 52 - 205
Target Start/End: Original strand, 44785757 - 44785910
Alignment:
Q  52 ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctga 151  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||  | |||||||||  |||||| ||||||||||||||||||||||    
T  44785757 ctgagatcaaggtgtcgcaattgtgagagattcccaagttgagtaggaatctttccaccgtaaccaccaactgagaggtcaaggtatcgtaagttgctga 44785856  T
Q  152 acgatccaataaattttggaatttgaccactagtattcaaataactgaggtcta 205  Q
    | |||||||||||||||||||||||| || ||||| |||||| |||||||||||    
T  44785857 aggatccaataaattttggaatttgatcattagtaatcaaatgactgaggtcta 44785910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 52 - 205
Target Start/End: Complemental strand, 35899124 - 35898971
Alignment:
Q  52 ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctga 151  Q
    ||||||| ||||| ||||||   ||||||||||| ||| |||| |||||||||||| ||  |||||| |||||||||||||| |||||| ||||||||||    
T  35899124 ctgagatcaaggtattgcaacaatgagagattcctaagctgagcaggaatcttcccatcgaaaccactatttgagagatcaatgtatcgcaagttgctga 35899025  T
Q  152 acgatccaataaattttggaatttgaccactagtattcaaataactgaggtcta 205  Q
    | || |||||||||||||| ||||||||||||||||||||| |||  |||||||    
T  35899024 aggagccaataaattttgggatttgaccactagtattcaaaaaaccaaggtcta 35898971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 44611786 - 44611682
Alignment:
Q  98 gaatcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttgaccactagtattcaaataact 197  Q
    |||||||||| ||| |||||| |||||||||||||||||||| |||||||| ||| || |||||||||||||| ||||||||||||||||||| ||||||    
T  44611786 gaatcttcccatcaaaaccactatttgagagatcaaggtatcttaagttgcagaaggagccaataaattttgggatttgaccactagtattcagataact 44611687  T
Q  198 gaggt 202  Q
    |||||    
T  44611686 gaggt 44611682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 177
Target Start/End: Original strand, 11544691 - 11544868
Alignment:
Q  4 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtag----ga 99  Q
    ||||||||||||||||||||||| |||  |||||  || |||||  | || |||| |||||||  ||| ||||||||||| |||||||||| ||    ||    
T  11544691 gaaagatttccgagttggaaaggaatttctccaatgagttcattgtagctaagatcaaggtgtctcaactgtgagagattgccaagttgagaaggaatga 11544790  T
Q  100 atcttcccctcataaccaccatttgagagatcaaggtatcgtaagttgctgaacgatccaataaattttggaatttga 177  Q
    |||||| | | ||||  || ||||||||||| |||||||| ||| ||| | || || |||||||||||||| ||||||    
T  11544791 atcttcgcatgataataactatttgagagattaaggtatcataacttggttaaggagccaataaattttgggatttga 11544868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 44612184 - 44612085
Alignment:
Q  4 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 103  Q
    ||||||||||| |||||||||||||||  ||||   || |||||    || |||| ||||||| ||||||||||||||||||||||||||| ||||||||    
T  44612184 gaaagatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaagttgagaaggaatct 44612085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 29508115 - 29508197
Alignment:
Q  7 agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaag 89  Q
    |||||||| |||||||| || |||| |||||  || ||||||  |||||||| |||||||||||||||||||||||| |||||    
T  29508115 agatttccaagttggaagggaattgctccaatgagttcattacctctgagatcaaggtgttgcaattgtgagagatttccaag 29508197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 29507536 - 29507624
Alignment:
Q  4 gaaagatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg 92  Q
    |||||||||  |||||| |||||||||| |||||  || |||||  | ||||||| ||||||||| |||||||||||||| ||||||||    
T  29507536 gaaagattttggagttgtaaagggattgctccaattagttcattgtagctgagatcaaggtgttgtaattgtgagagatttccaagttg 29507624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 29507611 - 29507696
Alignment:
Q  7 agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg 92  Q
    |||||||| |||||||| || |||| |||||  || |||||    ||||||| |||||||||||||||||||||||| ||||||||    
T  29507611 agatttccaagttggaagggaattgctccaatgagttcattttcgctgagatcaaggtgttgcaattgtgagagatttccaagttg 29507696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 29507683 - 29507768
Alignment:
Q  7 agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg 92  Q
    |||||||| |||||||| || |||| |||||  || |||||    ||||||| |||||||||||||||||||||||| ||||||||    
T  29507683 agatttccaagttggaagggaattgctccaatgagttcatttctgctgagatcaaggtgttgcaattgtgagagatttccaagttg 29507768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 29507874 - 29507912
Alignment:
Q  54 gagattaaggtgttgcaattgtgagagattcccaagttg 92  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29507874 gagatcaaggtgttgcaattgtgagagatttccaagttg 29507912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 29507946 - 29507984
Alignment:
Q  54 gagattaaggtgttgcaattgtgagagattcccaagttg 92  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29507946 gagatcaaggtgttgcaattgtgagagatttccaagttg 29507984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 29508090 - 29508128
Alignment:
Q  54 gagattaaggtgttgcaattgtgagagattcccaagttg 92  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29508090 gagatcaaggtgttgcaattgtgagagatttccaagttg 29508128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 29507755 - 29507840
Alignment:
Q  7 agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg 92  Q
    |||||||| |||||||| || |||  |||||  || |||||  | ||||||| ||| |||||||||||||||||||| ||||||||    
T  29507755 agatttccaagttggaagggaattcctccaatgagttcattgtagctgagatcaagatgttgcaattgtgagagatttccaagttg 29507840  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 29507971 - 29508056
Alignment:
Q  7 agatttccgagttggaaagggattgttccaacaagatcattaaatctgagattaaggtgttgcaattgtgagagattcccaagttg 92  Q
    |||||||| |||||||| || |||  |||||  || |||||  | ||||||| ||| |||||||||||||||||||| ||||||||    
T  29507971 agatttccaagttggaagggaattcctccaatgagttcattgtagctgagatcaagatgttgcaattgtgagagatttccaagttg 29508056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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