View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12011_low_3 (Length: 499)
Name: NF12011_low_3
Description: NF12011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12011_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 40472944 - 40472455
Alignment:
| Q |
1 |
cgattccactcctccaattgcatcttctcaaactacaatatccgccattaggccaaagacagtgaggttcaagccagcaatgaatatccccccttctcag |
100 |
Q |
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| T |
40472944 |
cgattccactcctccaattgcatcttctcaaactacaatatccgccattaggccaaagacagtgaggttcaagccagcaatgaatatccccccttctcag |
40472845 |
T |
|
| Q |
101 |
gtgaacattcagtgcaacataccataatgcagtgttttaaaaaccga-ctggaagttccaaccgagtgaaccttgaacggaccactactatggtgtggtt |
199 |
Q |
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| T |
40472844 |
gtgaacattcagtgcaacataccataatgcagtgttttaaaaactgaactggaagttccaaccgagtgaaccttgaacggaccactactatggtgtggtt |
40472745 |
T |
|
| Q |
200 |
attttggcggttcgattttggtttcgtctcgattcgagtggtttaagacggttgaatcatgacctagaggtcatgccggattgatgtccgttttggtttt |
299 |
Q |
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| T |
40472744 |
attttggcagttcgattttggtttcgtctcgattcgagcggtttaagacggttgaatcatgacctagaggtcatgccggattgatgtccgttttggtttt |
40472645 |
T |
|
| Q |
300 |
taaaacattgccatactgttttgaaatgcttcttggtttctaatgtatgttgtgtttttatcaattacaggctaatatttctggaggtgcacttagcagt |
399 |
Q |
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| T |
40472644 |
taaaacattgccatactgttttgaaatgcttcttggtttctaatgtatgttgtgtttttaccaattacaggttaatatttctggaggtgcacttagcagt |
40472545 |
T |
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| Q |
400 |
tcttctgacatggatcccaaacctgataccaatcaatctctcatttacaaaccaatggcaaaatttgtgtcacaaacaaccgtctctctg |
489 |
Q |
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| T |
40472544 |
tcttctgacatggatcccaaacctgataccaatcaatctctcatttacaaaccaatggcaaaatttgtgtcacaaacaaccgtctctctg |
40472455 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 15190546 - 15190591
Alignment:
| Q |
265 |
agaggtcatgccggattgatgtccgttttggtttttaaaacattgc |
310 |
Q |
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||||||| |||||| |||||||| | |||||||||||||||||||| |
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| T |
15190546 |
agaggtcttgccggtttgatgtctgctttggtttttaaaacattgc |
15190591 |
T |
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