View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12011_low_5 (Length: 452)
Name: NF12011_low_5
Description: NF12011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12011_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 6e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 257 - 436
Target Start/End: Complemental strand, 44344725 - 44344546
Alignment:
| Q |
257 |
ccttaactactgtcctaaatgtatttgttagcaagatccgttataaaaagttaatctacatggaaattgtttatttcagtgtagctaaccaaatcaaatc |
356 |
Q |
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| T |
44344725 |
ccttaactactgtcctaagtgcatttgttagctagacccattataaaaagctaatctacatagaaattgtttatttcagtgtagctaaccaactcaaatc |
44344626 |
T |
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| Q |
357 |
aaataaaatcaaatggaactaaaatgtaacacgtgcataacataggtcattgacgacatggaagagaaacaagtgttgtg |
436 |
Q |
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| T |
44344625 |
aaataaaatcaaatggaactaaaatgtaacacgtgcataacataggtcattgacgacatggaagagaaacaagtgttgtg |
44344546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 4 - 190
Target Start/End: Complemental strand, 44344976 - 44344792
Alignment:
| Q |
4 |
ggagcaaatgtttgtcatgaggataaggacatgctgctatgaaataggatgcttatccattttccatccatacacttannnnnnnnattatatatcttac |
103 |
Q |
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| T |
44344976 |
ggagcaaatgtttgtcatgaggataaggacatgctgctatgaaataggatgcttatccattttccatccaaacacttatttttt---ttatatatcttac |
44344880 |
T |
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| Q |
104 |
aaggtctcttttcaa-aaaatgtacaaatcatagggcatttgataagaaatttaaagttgaacatttattttgaaagttgtgtattca |
190 |
Q |
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| T |
44344879 |
aaggtctctcttcaagaaaatgtacaaattattggacacttgataagaagtttaaagttaaacatttatttcggaagttgtgtattca |
44344792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 31752807 - 31752759
Alignment:
| Q |
142 |
ttgataagaaatttaaagttgaacatttattttgaaagttgtgtattca |
190 |
Q |
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| T |
31752807 |
ttgataagaaatttaaagtaaaaggtttattttggaagttgtgtattca |
31752759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 46299447 - 46299495
Alignment:
| Q |
142 |
ttgataagaaatttaaagttgaacatttattttgaaagttgtgtattca |
190 |
Q |
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| T |
46299447 |
ttgataagaaatttaaagttaaaaatttattttgaaatttatgtattca |
46299495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 44529241 - 44529297
Alignment:
| Q |
134 |
tagggcatttgataagaaatttaaagttgaacatttattttgaaagttgtgtattca |
190 |
Q |
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| T |
44529241 |
taggacatttgataagaagtttaaagtggaagttttatcttaaaagttgtgtattca |
44529297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 9049971 - 9050027
Alignment:
| Q |
134 |
tagggcatttgataagaaatttaaagttgaacatttattttgaaagttgtgtattca |
190 |
Q |
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||||||| ||||||| || |||||| | ||| |||||||||||||||||||||||| |
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| T |
9049971 |
tagggcacttgataaaaagtttaaaatagaaagtttattttgaaagttgtgtattca |
9050027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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