View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12011_low_6 (Length: 433)
Name: NF12011_low_6
Description: NF12011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12011_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 1956638 - 1956230
Alignment:
| Q |
18 |
tatatctggctactttcctctctctatccctataaactgcacaatttatcatattaaattacaata---tt--atttatatatagataaaatatgaaatg |
112 |
Q |
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| T |
1956638 |
tatatttggctactttcctctctctatccctataaactgcattatatattatatcaaattgcaatcagtttcaagtgatttatagataaaatatgaaaaa |
1956539 |
T |
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| Q |
113 |
atcttnnnnnnnnn-ttgttactcatatatcctactttcaagagcagccatgtccacatgatcagatctttctgtgccatctatgttctgtggtacaagg |
211 |
Q |
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| T |
1956538 |
atctttaaataaaaattgtgactcagatatcctactttcaagagcagccatgtccacatgatcagatctttctgtgccatctatgttctgtggtactagg |
1956439 |
T |
|
| Q |
212 |
tctctgaaccatgatggatagttccaaagtgttagtgccccagaagtttggtgacccattgatactagtgtgcttgaaaatcctatcgttgacaaggttt |
311 |
Q |
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| T |
1956438 |
tctctgagccatgatggatagtttccaagtgttagggcaccagaagtttggtgacccattgatactaatgtgcttgaaaatcctatcgatgacaaggttt |
1956339 |
T |
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| Q |
312 |
tttctcctgctagtccaatcagatcattcataggaatcctgtataataccaaaagagatatattttttcagaacttttttagattatggagtgctaaaat |
411 |
Q |
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| T |
1956338 |
tttctcctggcaggccaatcagatcattcataggaatcctgtataataccaaaagagataaaaaaattcagaacttttttagattatggagtgctaaaaa |
1956239 |
T |
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| Q |
412 |
acacaatct |
420 |
Q |
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||||||||| |
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| T |
1956238 |
acacaatct |
1956230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 134 - 362
Target Start/End: Complemental strand, 1941401 - 1941173
Alignment:
| Q |
134 |
tcatatatcctactttcaagagcagccatgtccacatgatcagatctttctgtgccatctatgttctgtggtacaaggtctctgaaccatgatggatagt |
233 |
Q |
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||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| ||||| |||||||| |||| ||||| |||||||||||||| |
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| T |
1941401 |
tcatatatcatactttcaagagcagctaagtccacatgatcagatctttctgtgccatccatgttatgtggtactaggtttctgagccatgatggatagt |
1941302 |
T |
|
| Q |
234 |
tccaaagtgttagtgccccagaagtttggtgacccattgata-ctagtgtgcttgaaaatcctatcgttgacaaggttttttctcctgctagtccaatca |
332 |
Q |
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|||||||| ||| |||||| ||| ||||||||||||||||| | | ||| ||| || ||||||| | |||||| || |||||| |||||| |||| |
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| T |
1941301 |
tccaaagttctagggccccacaagcttggtgacccattgataccaattgtttttg-aactcctatctctatcaaggtcttctctccttgtagtccgatca |
1941203 |
T |
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| Q |
333 |
gatcattcataggaatcctgtataatacca |
362 |
Q |
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||| |||||||||||||| |||||||||| |
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| T |
1941202 |
aatcgttcataggaatcctatataatacca |
1941173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 137 - 356
Target Start/End: Complemental strand, 1927302 - 1927083
Alignment:
| Q |
137 |
tatatcctactttcaagagcagccatgtccacatgatcagatctttctgtgccatctatgttctgtggtacaaggtctctgaaccatgatggatagttcc |
236 |
Q |
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|||||| |||||||||| ||||| | |||||||||||| ||||||||||||||| || ||| |||||||| | ||||| | |||| ||||| |||| |
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| T |
1927302 |
tatatcatactttcaagtgcagctaaatccacatgatcacatctttctgtgccatttacgttatgtggtaccaaatctctaagaaatgagggataattcc |
1927203 |
T |
|
| Q |
237 |
aaagtgttagtgccccagaagtttggtgacccattgatactagtgtgcttgaaaatcctatcgttgacaaggttttttctcctgctagtccaatcagatc |
336 |
Q |
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||||| ||| || ||| ||| |||||||||||||||||||||||||||| || ||||||| || ||| ||||||||||| || |||||||| || |
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| T |
1927202 |
aaagttctagggcaccacaagcttggtgacccattgatactagtgtgctttcaactcctatctctgtcaattttttttctccttgtaatccaatcaattc |
1927103 |
T |
|
| Q |
337 |
attcataggaatcctgtata |
356 |
Q |
| |
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|| |||||||||||| |||| |
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| T |
1927102 |
atgcataggaatcctatata |
1927083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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