View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12011_low_9 (Length: 363)
Name: NF12011_low_9
Description: NF12011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12011_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 126; Significance: 6e-65; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 212 - 348
Target Start/End: Complemental strand, 39781429 - 39781292
Alignment:
| Q |
212 |
ggcacgagaaacactcggtgattgtgccattacacaatttgaacgtttaatacatatatagatgttgaaagagaagagggaatcattgcattgcacactt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39781429 |
ggcacgagaaacactcggtgattgtgccattacacaatttgaacgtctaatacatatatagatgttgaaagagaagagggaatcattgcattgcacactt |
39781330 |
T |
|
| Q |
312 |
atattt-aagatgaagaaaagttaattacttagtagtt |
348 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39781329 |
atatttaaagatgaagaaaagttaattacttagtagtt |
39781292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 39793429 - 39793257
Alignment:
| Q |
17 |
acatcagaattgattctaatagactctcctccgacacatctgatagagcttgaaacatttggaattgaaattcctcccggaatgtccaaaggacgacact |
116 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||| ||||||||||| ||||||||||| |||||| |||| |||| |
|
|
| T |
39793429 |
acatctgaattgattctaatagattctcctccaacacatctgatagaatttgaaacatctggaattgaaacccctcccggaatctccaaacgacggcact |
39793330 |
T |
|
| Q |
117 |
gttcttcattgaggaggatcaaccgtgaaccagtcttacaattgtcaaagttgatatcttttgttaaatcaaa |
189 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
39793329 |
gttctttatcgatgaggatcaaccgtgaaccagtcttacagttgtcaaagttgatatcttgtgttaaatcaaa |
39793257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 39781519 - 39781428
Alignment:
| Q |
17 |
acatcagaattgattctaatagactctcctccgacacatctgatagagcttgaaacatttggaattgaaattcctcccggaatgtccaaagg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39781519 |
acatcagaattgattctaatagactctcctccgacacatctgatagagcttgaaacatttggaattgaaattcctcccggaatgtccaaagg |
39781428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 39787872 - 39787760
Alignment:
| Q |
77 |
ggaattgaaattcctcccggaatgtccaaaggacgacactgttcttcattgaggaggatcaaccgtgaaccagtcttacaattgtcaaagttgatatctt |
176 |
Q |
| |
|
|||||||||| ||||||||||| |||||| |||| | || |||||||| | |||||| ||| |||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
39787872 |
ggaattgaaacccctcccggaatctccaaacgacggctctcttcttcatcggtgaggattaactgtgaaccagtcttacagttgtcaaagttaatatctt |
39787773 |
T |
|
| Q |
177 |
ttgttaaatcaaa |
189 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39787772 |
gtgttaaatcaaa |
39787760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 39775567 - 39775404
Alignment:
| Q |
17 |
acatcagaattgattctaatagactctcctccgacacatctgatagagcttgaaacatttggaattgaaattcctcccggaatgtccaaaggacgacact |
116 |
Q |
| |
|
||||| |||| |||||||||||| ||||||| ||||||| ||| |||| |||||||||||||||||| || || || |||| |||||| |||| || | |
|
|
| T |
39775567 |
acatctgaatggattctaatagattctcctctgacacatttgacagagtttgaaacatttggaattgtaacaccaccaggaagctccaaatgacggcagt |
39775468 |
T |
|
| Q |
117 |
gttct---tcattgaggaggatcaaccgtgaacc---agtcttacaattgtcaaagttgatatc |
174 |
Q |
| |
|
||| | | ||||| || |||||| ||||||| | ||||||||||||||||||||||||| |
|
|
| T |
39775467 |
gttgttgattattgatgaagatcaaaggtgaaccaatactcttacaattgtcaaagttgatatc |
39775404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University