View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12012_low_2 (Length: 795)

Name: NF12012_low_2
Description: NF12012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12012_low_2
NF12012_low_2
[»] chr5 (7 HSPs)
chr5 (215-776)||(26352951-26353519)
chr5 (124-214)||(32325811-32325901)
chr5 (124-214)||(7992408-7992498)
chr5 (124-214)||(12904980-12905070)
chr5 (218-296)||(9816563-9816641)
chr5 (163-214)||(34641930-34641981)
chr5 (403-437)||(38434774-38434808)
[»] chr3 (14 HSPs)
chr3 (469-775)||(26648844-26649156)
chr3 (215-439)||(26648626-26648848)
chr3 (598-774)||(20014271-20014451)
chr3 (124-219)||(53208685-53208780)
chr3 (124-210)||(32130160-32130246)
chr3 (223-386)||(20047330-20047496)
chr3 (124-214)||(7322855-7322945)
chr3 (142-214)||(9454604-9454676)
chr3 (215-390)||(20014618-20014793)
chr3 (231-274)||(26654636-26654680)
chr3 (497-533)||(19983418-19983454)
chr3 (483-542)||(19860352-19860411)
chr3 (323-389)||(20006701-20006767)
chr3 (444-478)||(20014497-20014531)
[»] chr7 (5 HSPs)
chr7 (123-214)||(36167730-36167821)
chr7 (125-214)||(19886572-19886661)
chr7 (125-214)||(32775171-32775260)
chr7 (124-215)||(12859245-12859336)
chr7 (171-216)||(11600122-11600167)
[»] chr8 (7 HSPs)
chr8 (124-212)||(1548139-1548227)
chr8 (124-213)||(34784519-34784608)
chr8 (124-215)||(23033395-23033486)
chr8 (124-210)||(3117707-3117793)
chr8 (129-215)||(3277517-3277603)
chr8 (124-214)||(20900774-20900864)
chr8 (139-186)||(29168561-29168608)
[»] chr2 (5 HSPs)
chr2 (124-212)||(44673172-44673260)
chr2 (124-214)||(25438287-25438377)
chr2 (141-210)||(37154903-37154972)
chr2 (163-214)||(6536545-6536596)
chr2 (163-215)||(21006375-21006427)
[»] chr1 (3 HSPs)
chr1 (243-438)||(1718684-1718879)
chr1 (621-775)||(1719012-1719165)
chr1 (503-547)||(1718951-1718995)
[»] chr6 (1 HSPs)
chr6 (124-216)||(13425676-13425768)
[»] chr4 (5 HSPs)
chr4 (124-214)||(16497910-16498000)
chr4 (124-212)||(2588491-2588579)
chr4 (123-212)||(5650758-5650847)
chr4 (139-214)||(52249500-52249575)
chr4 (163-214)||(28075449-28075500)


Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 215 - 776
Target Start/End: Complemental strand, 26353519 - 26352951
Alignment:
Q  215 accaccatcatcttcttcttaaaactttattttgtttttgaattctcttcatgaaactcacgacagtgatgctcttttcatactctt-attgtgttgaaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26353519 accaccatcatcttcttcttaaaactttattttgtttttgaattcccttcatgaaactcacgacagtgatgctcttttcatactcttgattgtgttgaaa 26353420  T
Q  314 acaattgaaggaataagtaatactagttttaatgagttaatctatatatttttattaactgatatgcttgtgttattggttgtatataggtagtattggc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26353419 acaattgaaggaataagtaatactagttttaatgagttaatctatatatttttattaactgatatgcttgtgttattggttgtatataggtagtattggc 26353320  T
Q  414 atgagtaacacatattttgctatgtaaatcatgaagtgaatctaaagccaaactcatgtatatattattaacactcgagcttcctatctgaagtgaagca 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  26353319 atgagtaacacatattttgctatgtaaatcatgaagtgaatctaatgccaaactcatgt-tatattattaacacttgagcttcctatctgaagtgaagca 26353221  T
Q  514 taactctttcctaatttcatcatgagtaacttaatgtagctttaatttctcttgtat--tcaaaacacagattttcaaatct-----ctgttggacaaaa 606  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||     |||||||||||||    
T  26353220 taactctttcctaatttcatcatgagtaacttaatgtaactttaatttctcttgtacagtcaaaacacagattttcaaatcttaaatctgttggacaaaa 26353121  T
Q  607 atcagaatggatcaagatcctctgctgtcaatttctttctgcatcatctttcatttttctcacgattttctgaatgctccgtataatatgccttttttct 706  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26353120 atcagaatggatctagatcctctgctgtcaatttctttctgcatcatctttcatttttctcacgattttctgaatgctccgtataatatgccttttttct 26353021  T
Q  707 tgtaaaaactgtgctccataatagctttcatcggtagtaattagtagtggtgagtaaatgtgaagggacc 776  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26353020 tgtacaaactgtgctccataatagctttcatcggtagtaattagtagcggtgagtaaatgtgaagggacc 26352951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 32325811 - 32325901
Alignment:
Q  124 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 214  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  32325811 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtacgatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 32325901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 7992408 - 7992498
Alignment:
Q  124 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 214  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||    
T  7992408 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 7992498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 12904980 - 12905070
Alignment:
Q  124 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 214  Q
    ||||||||||||||||||||||| || ||| ||| ||||||||||| |||||||||||||||| ||| || ||||||||||||||||||||    
T  12904980 ggttcgtaagtaggatcgaagcatggtcgatgtgttgtggcacgtaagatcgtgcgatcctacgtgctggaactcgttcctgactaccttg 12905070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 218 - 296
Target Start/End: Original strand, 9816563 - 9816641
Alignment:
Q  218 accatcatcttcttcttaaaactttattttgtttttgaattctcttcatgaaactcacgacagtgatgctcttttcata 296  Q
    |||| |||| |||||||||| |||||||||| |||| |||||||||| ||||||||| |||||||||||| ||||||||    
T  9816563 accaccatcgtcttcttaaacctttattttgctttttaattctcttcctgaaactcatgacagtgatgctattttcata 9816641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 34641930 - 34641981
Alignment:
Q  163 gcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 214  Q
    ||||||| |||||||||||||||||||| |||||||| ||||| ||||||||    
T  34641930 gcacgtaagatcgtgcgatcctacatgctgggactcgatcctggctaccttg 34641981  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 403 - 437
Target Start/End: Complemental strand, 38434808 - 38434774
Alignment:
Q  403 gtagtattggcatgagtaacacatattttgctatg 437  Q
    ||||||||||||||| |||||||||||||||||||    
T  38434808 gtagtattggcatgactaacacatattttgctatg 38434774  T

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Target: chr3 (Bit Score: 104; Significance: 2e-51; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 469 - 775
Target Start/End: Original strand, 26648844 - 26649156
Alignment:
Q  469 atgtatatattattaacactcgagcttcctatctgaagtgaagcataactctttcctaatttcatcatgagtaacttaatgtagctttaatttctcttgt 568  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||| | ||||||  |||||||||| ||||||||||||| ||||||||| |    
T  26648844 atgtatatattatcaacacttgagcttcctatctgaagtgaagcataactcttccttaattttttcatgagtaatttaatgtagcttttatttctctttt 26648943  T
Q  569 --attcaaaacacagattttcaaatc-----tctgttggacaaaaatcagaatggatcaagatcctctgctgtcaatttctttctgcatcatctttcatt 661  Q
      |  ||||||||| |||  ||||||     |||| | ||||||||| |||||||||| ||||||||||||||  |||| ||||||||||||||||||||    
T  26648944 acagccaaaacacaaattcgcaaatcttaaatctgcttgacaaaaattagaatggatctagatcctctgctgtagatttgtttctgcatcatctttcatt 26649043  T
Q  662 tttctcacgattttctgaatgctccgtataata-tgccttttttcttgtaaaaactgtgctccataatagctttcatcggtagtaattagtagtggtgag 760  Q
    ||||||| || ||||||  || | | ||||||| || |||| |||||||| || ||||| | ||||||||||||||| | || |||||| |||||| ||     
T  26649044 tttctcatga-tttctg-ctgtttcatataatagtgtctttattcttgtataacctgtgatacataatagctttcattgataataattattagtggcgac 26649141  T
Q  761 taaatgtgaagggac 775  Q
    |||| ||||||||||    
T  26649142 taaacgtgaagggac 26649156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 215 - 439
Target Start/End: Original strand, 26648626 - 26648848
Alignment:
Q  215 accaccatcatcttcttcttaaaactttattttgtttttgaattctcttcatgaaactcacgacagtgatgctcttttcatactcttattgtgttgaaaa 314  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||| ||||||  ||||||||||||||| |   | |||||| ||    
T  26648626 accaccatcatctttttcttaaaactttaatttgtttttgaattctcctcctgaaactcatgacagtagtgctcttttcatactgtccatttgttgataa 26648725  T
Q  315 caattgaaggaataagtaatactagttttaatgagttaatctatatatttttattaactgatatgcttgtgttattggttgtatataggtagtattggca 414  Q
    |||  ||||||  ||||| || ||||||||||||||||   ||||||||||||| ||||||||||| |||||||||  || | |||| |||| |||||||    
T  26648726 caaaggaaggagaaagtagtattagttttaatgagttatgatatatatttttatcaactgatatgcctgtgttattatttatctataagtagcattggca 26648825  T
Q  415 tgagtaacacatattttgctatgta 439  Q
    ||| || |||  |||||||||||||    
T  26648826 tgactagcac--attttgctatgta 26648848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 598 - 774
Target Start/End: Complemental strand, 20014451 - 20014271
Alignment:
Q  598 tggacaaaaatcagaatggatcaagatcctctgctgtcaatttctttctgcatcatctttcatttttctcacgattttctgaatgctccgtataata-tg 696  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||| | ||||| |||||||||| |||||||||  || | ||||||||| ||    
T  20014451 tggacaaaaatcagaatggatcttgatcctctgctgtcaatttctttctgcaccgtcttttatttttctcatgattttctg-ctgtttcgtataatagtg 20014353  T
Q  697 cctt----ttttcttgtaaaaactgtgctccataatagctttcatcggtagtaattagtagtggtgagtaaatgtgaaggga 774  Q
    ||||    |||||||||| || ||||||| || |||||| ||||| |||||||| |||||||||||| || |||||||||||    
T  20014352 cctttttcttttcttgtacaacctgtgctacaaaatagccttcattggtagtaactagtagtggtgattacatgtgaaggga 20014271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 53208685 - 53208780
Alignment:
Q  124 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttgaccac 219  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  53208685 ggtttgtaagtaggatcgaaacacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttgcccac 53208780  T

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Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 32130246 - 32130160
Alignment:
Q  124 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactac 210  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||    
T  32130246 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgcgactcgttcctgactac 32130160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 223 - 386
Target Start/End: Original strand, 20047330 - 20047496
Alignment:
Q  223 catcttcttcttaaaactttattttgtttttgaattctcttcatgaaactcacgacagtgatgctcttttcatactct-tattgtgttgaaaacaattga 321  Q
    ||||||| ||||||||  |||| ||||||||||||| | ||||| ||||| | ||||||||| ||||||||||||||| |||| |||||| ||||| |||    
T  20047330 catcttcatcttaaaaagttatcttgtttttgaattttgttcatcaaacttatgacagtgattctcttttcatactctctattttgttgataacaaatga 20047429  T
Q  322 aggaataa--gtaatactagttttaatgagttaatctatatatttttattaactgatatgcttgtgt 386  Q
    ||||  ||   ||| | ||||||| ||||||||  ||||||||||||||||||||||||| ||||||    
T  20047430 aggataaattttaagattagttttgatgagttatgctatatatttttattaactgatatgattgtgt 20047496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 7322945 - 7322855
Alignment:
Q  124 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 214  Q
    ||||||||||||| |  ||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||||||    
T  7322945 ggttcgtaagtagaactgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctggctaccttg 7322855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 9454676 - 9454604
Alignment:
Q  142 aagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 214  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||||    
T  9454676 aagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacatgctgggaatcgttcttgactaccttg 9454604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 215 - 390
Target Start/End: Complemental strand, 20014793 - 20014618
Alignment:
Q  215 accaccatcatcttcttcttaaaactttattttgtttttgaattctcttcatgaaactcacgacagtgatgctcttttcatactctt-attgtgttgaaa 313  Q
    ||||||| |||||||||||||||| ||| | ||||||||||||||| ||| ||||||||   || ||||  || ||||||||||||  ||| |||||| |    
T  20014793 accaccaccatcttcttcttaaaatttt-tgttgtttttgaattctgttcctgaaactcgttacggtgacacttttttcatactctccattttgttgata 20014695  T
Q  314 acaattgaaggaataagtaatactagttttaatgagttaatctatatatttttattaactgatatgcttgtgttatt 390  Q
    | || ||||||   |||||||||||| ||| ||||||||   ||||| |||||||||||||||||| ||| ||||||    
T  20014694 agaaatgaaggcggaagtaatactagctttgatgagttatgatatatgtttttattaactgatatgattgggttatt 20014618  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 26654636 - 26654680
Alignment:
Q  231 tcttaaaactttat-tttgtttttgaattctcttcatgaaactca 274  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  26654636 tcttaaaactttatatttgtttttgaattctcttcatgaaactca 26654680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 497 - 533
Target Start/End: Original strand, 19983418 - 19983454
Alignment:
Q  497 ctatctgaagtgaagcataactctttcctaatttcat 533  Q
    ||||||||||||||||||| |||||||||||||||||    
T  19983418 ctatctgaagtgaagcatagctctttcctaatttcat 19983454  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 483 - 542
Target Start/End: Original strand, 19860352 - 19860411
Alignment:
Q  483 aacactcgagcttcctatctgaagtgaagcataactctttcctaatttcatcatgagtaa 542  Q
    |||||| |||| | ||| ||||||||||||||||||||||| |||||| | |||||||||    
T  19860352 aacactagagccttctagctgaagtgaagcataactctttcataattttagcatgagtaa 19860411  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 20006767 - 20006701
Alignment:
Q  323 ggaataagtaatactagttttaatgagttaatctatatatttttattaactgatatgcttgtgttat 389  Q
    ||||||||||||||||||||  || |||||   ||||| ||||||||| ||| ||||||||||||||    
T  20006767 ggaataagtaatactagtttagataagttatgatatatgtttttattatctgctatgcttgtgttat 20006701  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 444 - 478
Target Start/End: Complemental strand, 20014531 - 20014497
Alignment:
Q  444 atgaagtgaatctaaagccaaactcatgtatatat 478  Q
    |||||||||||||||| ||||||||||||||||||    
T  20014531 atgaagtgaatctaaatccaaactcatgtatatat 20014497  T

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Target: chr7 (Bit Score: 76; Significance: 1e-34; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 123 - 214
Target Start/End: Original strand, 36167730 - 36167821
Alignment:
Q  123 tggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 214  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||    
T  36167730 tggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 36167821  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 19886661 - 19886572
Alignment:
Q  125 gttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 214  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||||||||||    
T  19886661 gttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgtgatcctacgtgctgggactcgttcctgactaccttg 19886572  T

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Target: chr7; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 32775260 - 32775171
Alignment:
Q  125 gttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 214  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||||||||||    
T  32775260 gttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaaggtcgtgtgatcctacatgctgggactcgttcctgactaccttg 32775171  T

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Target: chr7; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 12859245 - 12859336
Alignment:
Q  124 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttga 215  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||| ||||||||||||||||    
T  12859245 ggttcgtaagtaggaccgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttga 12859336  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 11600122 - 11600167
Alignment:
Q  171 gatcgtgcgatcctacatgccgggactcgttcctgactaccttgac 216  Q
    ||||||||||||||||| || |||||||| ||||| ||||||||||    
T  11600122 gatcgtgcgatcctacaagctgggactcgatcctggctaccttgac 11600167  T

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Target: chr8 (Bit Score: 73; Significance: 6e-33; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 1548227 - 1548139
Alignment:
Q  124 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactacct 212  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  1548227 ggttcgtaagtaggatcgaagcacgttcgaggtgctgtggcacgtaagatcgtgcgatcctacatgctgggactcgttcctgactacct 1548139  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 34784519 - 34784608
Alignment:
Q  124 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactacctt 213  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  34784519 ggtttgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacctt 34784608  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 23033486 - 23033395
Alignment:
Q  124 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttga 215  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||| ||||||||    
T  23033486 ggttcgtaagtaggatcgaagcacggtcgaggtgttgtggcacgtaagatcatgcgatcctacatgctgggactcgttcctgagtaccttga 23033395  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 3117793 - 3117707
Alignment:
Q  124 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactac 210  Q
    |||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||| ||| ||||||| |||||||||||    
T  3117793 ggttcgtaagtaggatcgaagcacggtcgaggtactgtggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactac 3117707  T

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Target: chr8; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 3277603 - 3277517
Alignment:
Q  129 gtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttga 215  Q
    ||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||    
T  3277603 gtaagtaggattgaagcacggtcgaggtgttgtggcacgtaagatcgtgcgatcctacatgctgggattcgttcctgactaccttga 3277517  T

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Target: chr8; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 20900864 - 20900774
Alignment:
Q  124 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 214  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| ||| |||||| ||||||||||||||||    
T  20900864 ggtttgtaagtaggatcgaagcacagtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggacttgttcctgactaccttg 20900774  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 29168561 - 29168608
Alignment:
Q  139 tcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctac 186  Q
    ||||||||||| ||||||||||||||||||| ||||||| ||||||||    
T  29168561 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgtgatcctac 29168608  T

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Target: chr2 (Bit Score: 73; Significance: 6e-33; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 44673260 - 44673172
Alignment:
Q  124 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactacct 212  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||    
T  44673260 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacct 44673172  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 25438377 - 25438287
Alignment:
Q  124 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 214  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||| ||| |||||||||||||||||||||||    
T  25438377 ggttcgtaagtaggatcaaagcacggtcgaggtgctgtggcacgtaagatcatgcgatcctacgtgctgggactcgttcctgactaccttg 25438287  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 37154903 - 37154972
Alignment:
Q  141 gaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactac 210  Q
    ||||||||| |||| ||  |||||||||| ||||||||||||||||  |||||||||||||| |||||||    
T  37154903 gaagcacggtcgagatgtcgtggcacgtaagatcgtgcgatcctacgagccgggactcgttcttgactac 37154972  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 6536596 - 6536545
Alignment:
Q  163 gcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 214  Q
    ||||||| |||||||||||||||||||| |||||||| ||||| ||||||||    
T  6536596 gcacgtaagatcgtgcgatcctacatgctgggactcgatcctggctaccttg 6536545  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 21006375 - 21006427
Alignment:
Q  163 gcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttga 215  Q
    ||||||| |||||||||||||||| ||| |||||||| ||||| |||||||||    
T  21006375 gcacgtaagatcgtgcgatcctacgtgctgggactcgatcctggctaccttga 21006427  T

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Target: chr1 (Bit Score: 73; Significance: 6e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 243 - 438
Target Start/End: Original strand, 1718684 - 1718879
Alignment:
Q  243 attttgtttttgaattctcttcatgaaactcacgacagtgatgctcttttcatactctt-attgtgttgaaaacaattgaaggaataagtaatactagtt 341  Q
    ||||||||||||| || |||| |||||||||| |||| |||||||||||| |||||||| ||| |||||| ||||| |||||||  |||||||| |||||    
T  1718684 attttgtttttgacttttctttatgaaactcatgacattgatgctctttt-atactcttcattttgttgataacaaatgaaggagaaagtaatattagtt 1718782  T
Q  342 ttaatgagtta--atctatatatttttattaactgatatgcttgtgttattggttgtatataggtagtattggcatgagtaacacatattttgctatgt 438  Q
    |||||||||||  || |||| ||||||||||||||||||||||||||||||  || | |||| |||| ||| |||||| ||| ||  ||||||||||||    
T  1718783 ttaatgagttatgatgtataaatttttattaactgatatgcttgtgttattatttatctataagtaggatttgcatgactaagac--attttgctatgt 1718879  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 621 - 775
Target Start/End: Original strand, 1719012 - 1719165
Alignment:
Q  621 agatcctctgctgtcaatttctttctgcatcatctttcatttttctcacgattttctgaatgctccgtataatatgccttttttcttgtaaaaactgtgc 720  Q
    ||||||||||||||||||||||||||| ||||||||  |||||||  | |||||||||  || |   ||| | ||||||||||||||||| ||  |||||    
T  1719012 agatcctctgctgtcaatttctttctgtatcatcttgtatttttcatatgattttctgc-tgttatatatca-atgccttttttcttgtacaacatgtgc 1719109  T
Q  721 tccataatagctttcatcggtagtaattagtagt-ggtgagtaaatgtgaagggac 775  Q
    | ||||| ||||||||| |||||||| ||||||| ||||| |||||||||||||||    
T  1719110 tacataacagctttcattggtagtaaatagtagtaggtgactaaatgtgaagggac 1719165  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 503 - 547
Target Start/End: Original strand, 1718951 - 1718995
Alignment:
Q  503 gaagtgaagcataactctttcctaatttcatcatgagtaacttaa 547  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  1718951 gaagtgaagcataactctttcctaatttcatcatgagtaagttaa 1718995  T

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Target: chr6 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 13425676 - 13425768
Alignment:
Q  124 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttgac 216  Q
    |||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| ||| | |||||||||||||||||||||||    
T  13425676 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacataagatcgtgcgatcctacgtgctgcgactcgttcctgactaccttgac 13425768  T

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Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 16497910 - 16498000
Alignment:
Q  124 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 214  Q
    ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||    
T  16497910 ggttcgtaagtaggaccgaagcacggtcgaggtgctgtggcacatacgatcgtgcgatcctacgtgctgggactcgttcttgactaccttg 16498000  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 2588491 - 2588579
Alignment:
Q  124 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactacct 212  Q
    ||||||||||||||| ||||| |||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||    
T  2588491 ggttcgtaagtaggaccgaagtacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacct 2588579  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 5650758 - 5650847
Alignment:
Q  123 tggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactacct 212  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||  ||| |||||||||||| |||  ||||||||||||||||||||    
T  5650758 tggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtgagattgtgcgatcctacgtgcttggactcgttcctgactacct 5650847  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 52249500 - 52249575
Alignment:
Q  139 tcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 214  Q
    |||||||||||  |||||||||||||||||| |||||||||||||||| | | ||||||| |||||||||||||||    
T  52249500 tcgaagcacggtagaggtgctgtggcacgtaagatcgtgcgatcctacgtactgggactcattcctgactaccttg 52249575  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 28075500 - 28075449
Alignment:
Q  163 gcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 214  Q
    ||||||| ||||||||||||||||| || |||||||| ||||| ||||||||    
T  28075500 gcacgtaagatcgtgcgatcctacaagctgggactcgatcctggctaccttg 28075449  T

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