View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12012_low_3 (Length: 400)
Name: NF12012_low_3
Description: NF12012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12012_low_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 40473309 - 40472926
Alignment:
| Q |
18 |
atatctgggactacactagaacttttt-agtctacgattatgtttgcactattattgtcttttgaaactatgagttgttgaaacttttaatacaaacagt |
116 |
Q |
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| T |
40473309 |
atatctgggactacactagaacttttttagtctacgattatgtttgcactattattgtcctttgaaactttgagttgttgacacttttaatacaaacagt |
40473210 |
T |
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| Q |
117 |
tgcattaggaaccattattaaacctttgtgtatgtaatttgcaaattttaatgttatttaattatacctacctaccattgataagtataaatcccttgtt |
216 |
Q |
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| T |
40473209 |
tgcattaggaaccattattaaacctttgtgtatgtaatttgcaaattttaatgttatttaattatacctacctaccattgataagtataaatcccttgtt |
40473110 |
T |
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| Q |
217 |
agtttttgaaggtgaaagtcttgcaaacagaatcatacattgcgaaacatagcagttcatgatggatattgaagaagcagaaagagtagttgttgccaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40473109 |
agtttttgaaggtgaaagtcttgcaaacagaatcatacattgcgaaacatagcagttcatgatggatattgaagaagcagaaagagtagttgttgccaaa |
40473010 |
T |
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| Q |
317 |
ccagttgcttcaaggcctacttgttcttcttacaaatctttctcagaacttctagcaggtgcaatcgattccactcctccaatt |
400 |
Q |
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| T |
40473009 |
ccagttgcttcaaggcctacttgttcttcttacaaatctttctcagaacttctagcaggtgcaatcgattccactcctccaatt |
40472926 |
T |
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