View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12012_low_4 (Length: 395)
Name: NF12012_low_4
Description: NF12012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12012_low_4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 6 - 378
Target Start/End: Complemental strand, 29602019 - 29601647
Alignment:
| Q |
6 |
agtttcaattgttgaaattccataatgaaaatatatttgacaatgctctccatttgtcatttactacaaatgacttgcttggacaaacatcaattcccac |
105 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| || | |||| ||||||||||||||||||||||||||| || |||||||||||| |||||||| | |
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|
| T |
29602019 |
agtttcaattgctgaaactccataatgaaaatataattaagaatgttctccatttgtcatttactacaaatgatttacttggacaaacaccaattcccgc |
29601920 |
T |
|
| Q |
106 |
tggattgagaaccatactttttccatcgaaagccaacaatgtagttttcttgaacaatttggcatcaaggtgtaaattcttgcgagttttgcggttaact |
205 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29601919 |
aggactgagaaccatactttttccattagaagccaacaatgtagcttttttgaacaatttggcatcaaggtgtaaattcttgcgagttttgcggttaact |
29601820 |
T |
|
| Q |
206 |
cattctacatatgagagttttccctgctcaattggtaaattaaaacatttgagatatctcaatcttaagcacaataaagaattgaagagcctccctgatt |
305 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
29601819 |
cattctacatatgagagtttgccccgctcaattggtaaattaaaacatttgagatatctcaatcttaagggaaataaagaattgaagagcctccctgatt |
29601720 |
T |
|
| Q |
306 |
ccgtgtgcaaacttcagaatttgcaaactttgaatctcgaaggatgcttaaagcttgaaacattacccaatgg |
378 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||| |||||||||||| |
|
|
| T |
29601719 |
cagtgtgcaaacttcagaatttgcaaactttgattcttgagggatgcttaaagcttgaaaaattacccaatgg |
29601647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 6 - 378
Target Start/End: Original strand, 29744242 - 29744613
Alignment:
| Q |
6 |
agtttcaattgttgaaattccataatgaaaatatatttgacaatgctctccatttgtcatttactacaaatgacttgcttggacaaacatcaattcccac |
105 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29744242 |
agtttcaattgttaaaattccataatgaaaatataattgagaatgttctccatttgtcatttactacaaatgatttgcttggacaaacatcaattcccac |
29744341 |
T |
|
| Q |
106 |
tggattgagaaccatactttttccatcgaaagccaacaatgtagttttcttgaacaatttggcatcaaggtgtaaattcttgcgagttttgcggttaact |
205 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
29744342 |
tggattgagaaccatactttttccata-aaatccaacaatatagctttcttgaacaatttggcatcaaggtttaaattcttgcgagttttgcagttaact |
29744440 |
T |
|
| Q |
206 |
cattctacatatgagagttttccctgctcaattggtaaattaaaacatttgagatatctcaatcttaagcacaataaagaattgaagagcctccctgatt |
305 |
Q |
| |
|
|||||| |||||||||||| ||| ||||||||| ||||||||| |||||| |||||||||||||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
29744441 |
aattctaaatatgagagtttaccccgctcaattgataaattaaagcatttgcgatatctcaatcttcaggacaataaagaattgaagatcctccctgatt |
29744540 |
T |
|
| Q |
306 |
ccgtgtgcaaacttcagaatttgcaaactttgaatctcgaaggatgcttaaagcttgaaacattacccaatgg |
378 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||| |||||||| |
|
|
| T |
29744541 |
cagtgtgcaaacttcagaatttgcaatctttgaatctcggtggatgcttaaagtttgaaacattgcccaatgg |
29744613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 6 - 378
Target Start/End: Original strand, 29751275 - 29751647
Alignment:
| Q |
6 |
agtttcaattgttgaaattccataatgaaaatatatttgacaatgctctccatttgtcatttactacaaatgacttgcttggacaaacatcaattcccac |
105 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || | |||| ||||||||||||||||||||||||||| || |||||||||||| |||||||| | |
|
|
| T |
29751275 |
agtttcaattgctgaaattccataatgaaaatataattaagaatgttctccatttgtcatttactacaaatgatttacttggacaaacaccaattcccgc |
29751374 |
T |
|
| Q |
106 |
tggattgagaaccatacttttt-ccatcgaaagccaacaatgtagttttcttgaacaatttggcatcaaggtgtaaattcttgcgagttttgcggttaac |
204 |
Q |
| |
|
||| ||||||||||||||||| |||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29751375 |
aggactgagaaccatacttttttccattagaagccaacaatgtagcttttttgaacaatttggcatcaaggtgtaaattcttgcgagttttgcggttaac |
29751474 |
T |
|
| Q |
205 |
tcattctacatatgagagttttccctgctcaattggtaaattaaaacatttgagatatctcaatcttaagcacaataaagaattgaagagcctccctgat |
304 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
29751475 |
tcattctacatatgagagttttccccgctcaattggtaaattaaaacatttgagatatctc-atcttaagggaaataaagaattgaagagcctcccagat |
29751573 |
T |
|
| Q |
305 |
tccgtgtgcaaacttcagaatttgcaaactttgaatctcgaaggatgcttaaagcttgaaacattacccaatgg |
378 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||| |||||||||||| |
|
|
| T |
29751574 |
tcagtgtgcaaacttcagaatttgcaaactttgattcttgagggatgcttaaagcttgaaaaattacccaatgg |
29751647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 8e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 6 - 378
Target Start/End: Original strand, 49341508 - 49341879
Alignment:
| Q |
6 |
agtttcaattgttgaaattccataatgaaaatatatttgacaatgctctccatttgtcatttactacaaatgacttgcttggacaaacatcaattcccac |
105 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| || |||| || ||||||||||||| || |||||| |||||||| | |||| | |||| || |
|
|
| T |
49341508 |
agtttcaattgttgaaatttcatgatgaaaatatattcgagaatgtccttcatttgtcatttattaaaaatgatttgcttggcctaacacgagttcctac |
49341607 |
T |
|
| Q |
106 |
tggattgagaaccatactttttccatcgaaagccaacaatgtagttttcttgaacaatttggcatcaaggtgtaaattcttgcgagttttgcggttaact |
205 |
Q |
| |
|
|| |||||||||| || ||||| | ||| ||||||| || ||||||||| | ||||| ||||||| ||||||||||| ||||| |||||| || |
|
|
| T |
49341608 |
aggtctgagaaccatgctatttcccaagggagctaacaatgaagctttcttgaaaacattggcgtcaaggttcaaattcttgcgtgttttacggttagct |
49341707 |
T |
|
| Q |
206 |
cattctacatatgagagttttccctgctcaattggtaaattaaaacatttgagatatctcaatcttaagcacaataaagaattgaagagcctccctgatt |
305 |
Q |
| |
|
||||||| |||||||||||||||| |||| ||| | |||||||||||||| ||||||||||||||| || | |||||||||||||||||||||||| ||| |
|
|
| T |
49341708 |
cattctaaatatgagagttttccccgctctatttgaaaattaaaacatttaagatatctcaatcttgagaataataaagaattgaagagcctccctaatt |
49341807 |
T |
|
| Q |
306 |
ccgtgtgcaaacttcagaatttgcaaactttgaatctcgaaggatgcttaaagcttgaaacattacccaatgg |
378 |
Q |
| |
|
| ||||||||||| |||||| |||| |||||| ||||||| || ||| |||||||| |||||||||||||||| |
|
|
| T |
49341808 |
cagtgtgcaaactccagaatctgcatactttg-atctcgatggttgcataaagcttcaaacattacccaatgg |
49341879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 6 - 378
Target Start/End: Original strand, 49352886 - 49353258
Alignment:
| Q |
6 |
agtttcaattgttgaaattccataatgaaaatatatttgacaatgctctccatttgtcatttactacaaatgacttgcttggacaaacatcaattcccac |
105 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| | || |||| || ||| |||||||| || |||||| |||||||| | ||| | |||| || |
|
|
| T |
49352886 |
agtttcaattgttgaaatttcataatgaaaatatactcgagaatgtccttcatctgtcatttcttaaaaatgatttgcttggcctaacgccggttcctac |
49352985 |
T |
|
| Q |
106 |
tggattgagaaccatactttttccatcgaaagccaacaatgtagttttcttgaacaatttggcatcaaggtgtaaattcttgcgagttttgcggttaact |
205 |
Q |
| |
|
||| |||||||| | | ||||| | ||||||||||| || ||||||||| | ||||| |||||||| ||||||||||| ||||| | |||| || |
|
|
| T |
49352986 |
tggcctgagaaccttgatatttcctaagggagccaacaatgaagctttcttgaaaactttggtgtcaaggtgcaaattcttgcgtgttttacagttacct |
49353085 |
T |
|
| Q |
206 |
cattctacatatgagagttttccctgctcaattggtaaattaaaacatttgagatatctcaatcttaagcacaataaagaattgaagagcctccctgatt |
305 |
Q |
| |
|
|||||||||| |||||||| ||| |||| ||||| |||||||||||||| ||||||||||||||| | | ||||||||||||||||| ||||| | |
|
|
| T |
49353086 |
gattctacatacgagagtttgccccgctctattggcaaattaaaacatttaagatatctcaatcttggaaaaagcaaagaattgaagagccttcctgact |
49353185 |
T |
|
| Q |
306 |
ccgtgtgcaaacttcagaatttgcaaactttgaatctcgaaggatgcttaaagcttgaaacattacccaatgg |
378 |
Q |
| |
|
| |||||||||| |||||| | | |||||||| ||| | || ||| |||||||| ||| |||||||||||| |
|
|
| T |
49353186 |
cattgtgcaaactccagaatctatacactttgaaactcaatggttgcataaagcttaaaaaattacccaatgg |
49353258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 177
Target Start/End: Original strand, 19030845 - 19031016
Alignment:
| Q |
6 |
agtttcaattgttgaaattccataatgaaaatatatttgacaatgctctccatttgtcatttactacaaatgacttgcttggacaaacatcaattcccac |
105 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||| || ||| ||| ||| ||||||||| | |||||| |||||||| ||||| ||||||| || |
|
|
| T |
19030845 |
agtttcagttgttgaaatttcataatgaaaatatatcagagaatattcttcatctgtcatttattgaaaatgatttgcttggcaaaacaccaattcctac |
19030944 |
T |
|
| Q |
106 |
tggattgagaaccatactttttccatcgaaagccaacaatgtagttttcttgaacaatttggcatcaaggtg |
177 |
Q |
| |
|
||| | ||||| || | ||||| | ||||||| ||| || ||||||||||| ||||| ||||||||| |
|
|
| T |
19030945 |
tggtctaagaactatcatatttcctaagggagccaacgatgaagctttcttgaacattttggtatcaaggtg |
19031016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 6 - 378
Target Start/End: Complemental strand, 32783383 - 32783011
Alignment:
| Q |
6 |
agtttcaattgttgaaattccataatgaaaatatatttgacaatgctctccatttgtcatttactacaaatgacttgcttggacaaacatcaattcccac |
105 |
Q |
| |
|
||||||||||| | |||| ||||||||||||||| | || |||| || ||| ||||||||| || |||||| |||||||| |||| || |||| || |
|
|
| T |
32783383 |
agtttcaattgattgaatttcataatgaaaatatactcgagaatgtccttcatctgtcatttattaaaaatgatttgcttggcgtaacaccagttcctac |
32783284 |
T |
|
| Q |
106 |
tggattgagaaccatactttttccatcgaaagccaacaatgtagttttcttgaacaatttggcatcaaggtgtaaattcttgcgagttttgcggttaact |
205 |
Q |
| |
|
||| ||||||| || || ||||| | |||||||| || || ||| || || | |||||| |||||||| |||||||| || |||| | |||| || |
|
|
| T |
32783283 |
tggtctgagaactatgctatttcctgaggaagccaacgataaagcttttttaaaaactttggcgtcaaggtgcaaattcttacggcttttacagttagct |
32783184 |
T |
|
| Q |
206 |
cattctacatatgagagttttccctgctcaattggtaaattaaaacatttgagatatctcaatcttaagcacaataaagaattgaagagcctccctgatt |
305 |
Q |
| |
|
|||||| |||||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||| ||| |
|
|
| T |
32783183 |
gattctaaatatgagagtttgccccgctctattggcaaattaaaacatttgagatatctcaatcttaagaatagtaaagaattgaagagcctccctaatt |
32783084 |
T |
|
| Q |
306 |
ccgtgtgcaaacttcagaatttgcaaactttgaatctcgaaggatgcttaaagcttgaaacattacccaatgg |
378 |
Q |
| |
|
| |||||||||| |||||| |||| |||||| ||||||| |||||| || ||||| |||||||||||||||| |
|
|
| T |
32783083 |
cactgtgcaaactccagaatctgcatactttggatctcgatggatgcatagagcttcaaacattacccaatgg |
32783011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 6 - 327
Target Start/End: Original strand, 35158393 - 35158714
Alignment:
| Q |
6 |
agtttcaattgttgaaattccataatgaaaatatatttgacaatgctctccatttgtcatttactacaaatgacttgcttggacaaacatcaattcccac |
105 |
Q |
| |
|
|||||||||||||||| | ||||| ||| ||||||| ||| ||||| | |||||||||||||||| |||| | ||| ||||| |||| || |||||| |
|
|
| T |
35158393 |
agtttcaattgttgaactcccatagtgacaatatatctgaaaatgccttacatttgtcatttactaaaaattatttgtttggaaaaactccacttcccag |
35158492 |
T |
|
| Q |
106 |
tggattgagaaccatactttttcca-tcgaaagccaacaatgtagttttcttgaacaatttggcatcaaggtgtaaattcttgcgagttttgcggttaac |
204 |
Q |
| |
|
|| ||||||||||||||||| ||| ||| || |||||| | || ||||||||| | ||||| ||||||||| | || |||||| ||||||| ||| |
|
|
| T |
35158493 |
aggtttgagaaccatacttttcccagtcg-gagtcaacaacgaagctttcttgaatactttggtatcaaggtgcacatgcttgcgggttttgcaaataaa |
35158591 |
T |
|
| Q |
205 |
tcattctacatatgagagttttccctgctcaattggtaaattaaaacatttgagatatctcaatcttaagcacaataaagaattgaagagcctccctgat |
304 |
Q |
| |
|
| ||||| ||||||||| || || |||| ||||||||||||||||| |||||||||||||||||| | | ||| || || | |||||| |||||||| |
|
|
| T |
35158592 |
taattctggatatgagagcttgcctagctccattggtaaattaaaacacttgagatatctcaatcttgaagataatgaaaaactcaagagcgtccctgat |
35158691 |
T |
|
| Q |
305 |
tccgtgtgcaaacttcagaattt |
327 |
Q |
| |
|
|| ||||||||||| || ||||| |
|
|
| T |
35158692 |
tcagtgtgcaaactccaaaattt |
35158714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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